LEGINON ACE DOCUMENTATION


 

  1. Experiment Name : Name of the experiment. The directory corresponding to the experiment name is shown below the experiment name.

  2. Database Type: The two database types are Leginon1 and Leginon2 . In Leginon1 the Kilovolts (KV) and pixel size (ps) cannot be queried and so the user has to provide that information. 

  3. Boolean: 

  4. File Type:  Choose the file type and the corresponding file filter. The file types foc, efar and enr correspond to focus, far from focus and near to focus  respectively.

  5. Directories : 

  6. Advanced: 

  7. File List box:  Shows the list of file of the type selected. A single file can be selected by clicking on the filename. Multiple files can be selected by CTRL+click and all files can be selected by CTRL+A

  8. Viewer: The viewer you would like to see your images. If gqview is used, it takes you to the correct output directory. Other viewers (like xv ) are simply launched.

  9. View Output: Launches the viewer.

  10. Process:  Starts processing of the selected images.

  11. Help:  Displays this page.

  12. Console Output: The console output displayed are partial results in the form

Filename Nominal_Defocus init_defocus defocus1 defocus2 amp_cont astig_ratio astig_angle confidence

filename.mrc 2.000000 2.068837 2.068963 2.068963 -0.000000 1.000000 0.000000 0.946178