<particles> | Raw particle filespec |
<refrences> | Reference image filespec |
[frac=<num>/<denom>] | Operate only on a fraction of the raw images |
[mask=<rad>] | Mask the classified particles, also reduces noise for better classification |
[refmask] | This will use a mask generated from the reference image. Assumes the 3D model has been sensibly masked. |
[maxshift=<rad>] | Maximum translation during image alignment |
[ctfc] | Projections are CTF corrected before comparison |
[logit=<label>] | This specifies a label to use in the particle.log file. This records particle number classification throughout a refinement. |
[refine] | Refines 2D alignment done with fast algorithm. Slower, but not 'slow'. |
[usefilt] | Use the 'filt' version of the input file for classification. |
EMAN Manual page, generated Wed Feb 18 10:33:43 2009