classes

This implements reference-free k-means classification based on a set of footprint files

classes <footprint file> <# classes> [list] [weight=<wt file>] [maxmove=<n>] The maximum number of particle moves in an iteration before the result is considered stable (default=0 [maxiter=<n>] The maximum number of iterations to run before stopping (default=100 [minsize=<n>] The minumum number of elements to permit in a valid class (default=1 [restart=<n>] Number of times to restart by moving one of the 2 closest together points to a random point

Parameters:


Description

This program is used to classify particles based on a set of invariants produced by one of the 'footprint' programs. These files may optionally have their dimensionality reduced with MSA.


EMAN Manual page, generated Wed Feb 18 10:33:43 2009
<footprint file>Input file
<# classes>Number of classes to generate
[list]Produce a list file
[weight=<wt file>]A file containing weighting for the input componenets
[maxmove=<n>] The maximum number of particle moves in an iteration before the result is considered stable (default=0[maxmove=<n>] The maximum number of particle moves in an iteration before the result is considered stable (default=0)
[maxiter=<n>] The maximum number of iterations to run before stopping (default=100[maxiter=<n>] The maximum number of iterations to run before stopping (default=100)
[minsize=<n>] The minumum number of elements to permit in a valid class (default=1[minsize=<n>] The minumum number of elements to permit in a valid class (default=1)
[restart=<n>] Number of times to restart by moving one of the 2 closest together points to a random point[restart=<n>] Number of times to restart by moving one of the 2 closest together points to a random point.