input=<filespec> | Image to be boxed (MRC format only!!!) |
ptclsize=<diameter> | Max diameter of the particles in pixels |
[boxsize=<size>] | Final box size in pixels (edge length) |
[output=<filespec>] | Output file for boxed images |
[dbout=<filespec>] | Output box database file |
circleboxer input=jj1232.mrc ptclsize=250 boxsize=274 output=jj1232.hed dbout=jj1232.box
This program performs offline boxing of micrographs by comparing the density inside a circle with the density immediately outside the circle, and using the standard deviation just outside the particle as an additional exclusion criteria