<cls file> | Path to a .cls file to extract particles from |
extractmonomers.py <cls file> <3d model> <monomer mask> <particle-monomer mask> <symmetry> <sf file> [dump] [mask]
After running a normal refinement with symmetry imposed, it may be interesting to investigate dynamics of individual monomers. This program will take a refined .cls file and extract all of the monomers from each particle by subtracting away the unwanted density (with CTF taken into account). The result will be a stack of monomer images which can be used for further processing.
This program is HIGHLY EXPERIMENTAL ! Contact Steve Ludtke before using.