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Bug #1181

closed

strange holefinder.py edge-template correlation failure

Added by Anchi Cheng over 13 years ago. Updated over 6 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion - Appion/Leginon 2.2.0
Start date:
02/09/2011
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

Reported by Thorsten Mielke

The combination of the attached hole image and these edge holefinder parameters takes a lot longer than I think it needs to and does not give back a real template correlation map.

Parameters:

Edge: Sigma=2.5, threshold=350
Template: Phase (correlation should work better though), inner diameter=280, outer=310, sigma=4
Threshold=4

Files

11feb02a_70SM_00020gr_00002sq_v10_00024hl.mrc (4 MB) 11feb02a_70SM_00020gr_00002sq_v10_00024hl.mrc Anchi Cheng, 02/09/2011 07:32 PM

Related issues 1 (0 open — 1 closed)

Related to Leginon - Bug #1180: hole finder exception in trying to pick to one hole for focusing but started with none anywayClosedJim Pulokas02/09/2011

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 #1

Updated by Jim Pulokas over 10 years ago

  • Assignee changed from Jim Pulokas to Anchi Cheng
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 #2

Updated by Sargis Dallakyan over 6 years ago

  • Status changed from Assigned to Closed
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