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Bug #1527

closed

Task #1513: CentOS 6 installation of myami 3.0 errors

xmipp installation instruction and does not work on CentOS 6

Added by Anchi Cheng over 12 years ago. Updated over 12 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
Sargis Dallakyan
Category:
Installation
Target version:
Appion/Leginon 2.2.0
Start date:
01/18/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0 (trunk)
Show in known bugs:
No
Workaround:

Description

http://emg.nysbc.org/projects/appion/wiki/Install_Xmipp

requires libmpi.so in 

/usr/lib64/openmpi/1.3.2-gcc/lib/libmpi.so

but I could only find

/usr/lib64/openmpi/lib/libmpi.so
/usr/lib64/openmpi/lib/libmpi.so.1
/usr/lib64/openmpi/lib/libmpi.so.1.0.1

even though all required yum packages are installed.

centosAutoinstallation.py fails because of the same requirement.

Also, mpi-selector is not in the path or anywhere. Shouldn't it be available once openmpi-devel is installed by yum?

Once the problems are solved, the wiki page as well as the autoinstaller will need to be updated.

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 #1

Updated by Sargis Dallakyan over 12 years ago

I've updated Install Xmipp to work with x86_64 CentOS 6.

Here are the commends needed to compile xmipp on CentOS 6:

export PATH=/usr/lib64/openmpi/bin:$PATH
./scons.configure MPI_LIBDIR=/lib/usr/lib64/openmpi/lib  MPI_LIB=mpi  MPI_INCLUDE=/lib/usr/lib64/openmpi/include
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 #2

Updated by Sargis Dallakyan over 12 years ago

  • Status changed from Assigned to Closed
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