Feature #1537
opencomplete the frealign refinement uploader
0%
Description
using the following command for development:
uploadFrealignRefine.py --runname=frealign_recon1 --stackid=23 --modelid=1 --jobid=82 --contour=2.0 --zoom=1.0 --description="bin2 frealign test" --box=160 --apix=1.64 --rundir=/ami/data00/appion/12jan12z/recon/frealign_recon1 --projectid=234 --expId=9441 --jobtype=uploadrecon
Updated by Amber Herold over 12 years ago
developing this based on changes made in #1323
Updated by Amber Herold about 12 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Amber Herold to Anchi Cheng
Updated by Anchi Cheng about 12 years ago
- Status changed from In Code Review to In Test
Updated by Anchi Cheng about 11 years ago
- Status changed from In Test to Assigned
- Assignee changed from Anchi Cheng to Amber Herold
This does not work because frealign is now run through multiple qsub from the base node so it never creates job file. reconUploader checks for it and quit because it could not find job file. I was able to trick it by making a fake job file. Even so, it is a bad idea. We overwrite runname.appionsub.job generated by prepRefineWhatever, and then it is over-written by uploadRefineWhatever. The record is lost, non-reproducible.
We should discuss what to do. One possibility is for reconUploader check runname.appionsub.commands instead because that is always generated.
Found a minor bug with C1 symmetry conversion. committed the change in r17425
Updated by Amber Herold about 10 years ago
- Assignee changed from Amber Herold to Bradley Kearney
Brad, Assigning this to you. Don't know if it is still relevant.