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Feature #1996

open

Add Maskiton to Appion

Added by Amber Herold over 11 years ago. Updated almost 11 years ago.

Status:
Assigned
Priority:
Normal
Assignee:
-
Category:
Web interface
Start date:
08/14/2012
Due date:
% Done:

0%

Estimated time:

Description

Adding Craigs masking tool to the appion pipeline.

Actions #1

Updated by Amber Herold about 11 years ago

Hi Craig,
I'd like to complete the Maskiton integration with Appion. I know there are some technical hurdles to a complete integration, but can you tell me if there is anything that can be done that still needs to be done?
Is there some way to access the results to pull them into appion?

Also, it would be great to have some text to add to the help page for Maskiton. Is there anything available?

Thanks.

Actions #2

Updated by Amber Herold about 11 years ago

Talked with Dipa to see how to use maskiton now. Removed code to select a stack. Users need to upload a stack to the maskiton server themselves using the maskiton interface.

Actions #3

Updated by Bridget Carragher about 11 years ago

But can we make an aligned stack in Appion? I.e. can we select a class and request that an aligned stack be generated form that class? Otherwise what stack do you hand to Maskiton?

Actions #4

Updated by Amber Herold about 11 years ago

I'll add making a stack of aligned particles to the todo list.
In the meantime, Dipa aand Dmitry, could you edit the maskiton help page (http://emg.nysbc.org/projects/appion/wiki/Maskiton)
to include the process for setting up everything to launch maskiton, even if there are steps that happen outside of appion (Spider, photoshop, anything else?)?

Actions #5

Updated by Amber Herold almost 11 years ago

  • Target version changed from Appion/Leginon 3.0.0 to Appion/Leginon Future Version

We will release 3.0 without the ability to make a stack of aligned particles. Moving this to future version.

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