Feature #230
closedadd particle labels to pipeline
100%
Description
particles will be assigned a label and then one can select which label they want to use in makestack.
Denis has implemented this in ManualPicker at NIS and put the code into subversion. See r13237 and r13238.
I thought the makestack interface was cluttered and moved some fields, see r13242.
Next I need to put label into DoG Picker and template Correlator, maybe TiltPicker, but I am not sure about TiltPicker.
Updated by Neil Voss about 14 years ago
Jim added the code in r12989. Should we get rid of multipicker.py just use manualpicker.py with the extra code?
Updated by Neil Voss about 14 years ago
We need to merge multipicker.py with manualpicker.py and also get the updated manualpicker.php code from NIS.
Updated by Neil Voss about 14 years ago
- Assignee changed from Neil Voss to Jim Pulokas
We need to copy of mutlipicker.py or whatever.
Updated by Neil Voss almost 14 years ago
- Target version set to Appion/Leginon 2.1.0
Updated by Anchi Cheng over 13 years ago
A lot of viewer-related changes are committed in r14748 to make the labeled particles to show up with different colors. These are what Denis have at NIS and there are still minor bugs that we will have to work on separately.
runManulpicker.php still needs to be modified to run the labeled picking.
Updated by Anchi Cheng over 13 years ago
merge multipicker.py function into manualpicker.py in r14751 so that the later can be removed once tested.
r14752 contains myamiweb changes to make it possible to use it in manual picking
r14753 contains a typo correction
Also make it possible to edit old unlabeled picks by assigning label to it if label is option is activated. If the old pick has labels, label option must be on and contains the old labels.
Updated by Anchi Cheng over 13 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Jim Pulokas to Eric Hou
Hi, Eric,
Could you do code review on the myamiweb-side (r14748, r14752). These are Denis's code and a lot of changes. Please pay attention that I have not revert some fixes you have added previously.
You can assign someone else such as Jim to code-review the python side.
Anyone can test.
Testing:
1. from a session run Manual Particle Pick with label added. You can add multiple labels.
2. Once completed, visit any image viewer and activate particle display by clicking "P".
3. Open particle display option tab (the down arrow right of the "P" icon ).
4. Choose to color by label, and select the labels to be displayed, change diameter of the individual labeled particles.
These should work. The display by threshold does not work on manually picked particle, though.
Updated by Eric Hou over 13 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Eric Hou to Amber Herold
- % Done changed from 80 to 100
Updated by Amber Herold over 13 years ago
- Status changed from In Test to Closed