Bug #417
closedpyami SPIDER module does not correctly write rectangular images.
100%
Description
fermiHighPass makes rectangular images look like a TV with bad reception
Updated by Neil Voss about 14 years ago
- Category deleted (
unknown) - Assignee changed from Neil Voss to Ed Brignole
- Target version deleted (
Appion Test Suite)
Can you post an example? Where are you using this?
Updated by Neil Voss about 14 years ago
- Subject changed from rectangular image messed up by fermiHighPass to pyami SPIDER module does not correctly write rectangular images.
- Status changed from Assigned to In Code Review
- Assignee changed from Ed Brignole to Amber Herold
fixed in r13715.
Updated by Amber Herold about 14 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Amber Herold to Neil Voss
Neil, can anyone in our group test this? TEst Procedure? Looks pretty straight forward.
Updated by Neil Voss about 14 years ago
- Assignee changed from Neil Voss to Jim Pulokas
read a square image, and write to SPIDER file, read it back it and it should be the same image.
Updated by Ed Brignole about 14 years ago
This might be related to Neil's point about incorrectly writing images: the webpage just started flipping micrographs (top-to-bottom). Particle coordinates mark correctly on the micrograph so I would guess you've flipped the image intentionally.
Secondly, if I click on the rectangular micrograph the new page that opens with the full-sized micrograph is square with the rectangle duplicated in the short dimension. (open rctviewer for 08sep18h and you'll see what I mean - the label on the micrograph should be mirrored when correctly viewed since it's a negative).
Updated by Neil Voss almost 14 years ago
- Target version set to Appion/Leginon 2.0.0
Updated by Jim Pulokas almost 14 years ago
- Status changed from In Test to Closed
added a test function to spider.py and it runs successfully