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Bug #4190

closed

DogPicker has two maxsize flags

Added by Yong Zi Tan almost 8 years ago. Updated about 7 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Yong Zi Tan
Category:
-
Target version:
Appion/Leginon 3.3
Start date:
05/19/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:

Description

Dear all,

The new DogPicker generates an additional --maxsize flag, thus creating an error when running it. Removal of the tag solves the problem.

/opt/myamisnap/bin/appion dogPicker.py --kfactor=1.2 --runname=dogrun1 --rundir=/gpfs/appion/yztan/16may15a/extract/dogrun1 --commit --preset=enn-a --projectid=211 --session=16may15a --no-rejects --no-wait --continue --pdiam=80 --lpval=10 --hpval=0 --medianval=2 --pixlimit=4 --binval=4 --planereg --invert --minthresh=0.4 --maxthresh=1.5 --maxpeaks=1500 --peaktype=centerofmass --maxsize=1.2 --overlapmult=1.5 --maxsize=1.2 --expid=2119 --jobtype=dogpicker

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 #1

Updated by Yong Zi Tan almost 8 years ago

  • Priority changed from Urgent to Normal
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 #2

Updated by Anchi Cheng almost 8 years ago

  • Status changed from New to In Test
  • Assignee changed from Anchi Cheng to Yong Zi Tan
  • Target version set to Appion/Leginon 3.3
  • Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3

Interesting bug. Looks like it has been there for a while. With the default set at the same value as in the python file, we will just not to add the special case.

Yong Zi, please check if the behavior of the dogPicker is the same as you intended.

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 #3

Updated by Anchi Cheng about 7 years ago

  • Status changed from In Test to Closed

stabe for a while now.

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