Bug #451: Dog Picker does not work on test image - Appion - Electron Microscopy Group

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Bug #451

closed

Dog Picker does not work on test image

Added by Arne Moeller about 14 years ago. Updated almost 14 years ago.

Status:

Closed

Priority:

Normal

Assignee:

Arne Moeller

Category:

Target version:

Appion/Leginon 2.0.0

Start date:

05/11/2010

Due date:

% Done:

100%

Estimated time:

Affected Version:

Show in known bugs:

Workaround:

Description

Run Dog Picker in test mode is not working
error message: "An Error occured - no image was created"

tested on image /ami/data00/leginon/10apr29c/rawdata/10apr29c_a_00012gr_00006sq_00002cs_v04_00003en_01.mrc

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Updated by Neil Voss about 14 years ago

Subject changed from Dog Picker to Dog Picker does not work on test image
Priority changed from Immediate to Normal
Target version set to Appion/Leginon 2.0.0

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Updated by Neil Voss about 14 years ago

Status changed from New to Assigned
Assignee set to Christopher Irving

There is some strange library things going on:

Traceback (most recent call last):
  File "/opt/appion/bin/dogPicker.py", line 77, in ?
    imgLoop = dogPicker()
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/particleLoop2.py", line 108, in __init__
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/appionLoop2.py", line 30, in __init__
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/appionScript.py", line 79, in __init__
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/particleLoop2.py", line 283, in checkGlobalConflicts
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/filterLoop.py", line 136, in checkGlobalConflicts
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/appionLoop2.py", line 272, in checkGlobalConflicts
  File "/var/tmp/appion-2.0-2_rc1-root/opt/appion/appionlib/apProject.py", line 21, in getProjectIdFromSessionName
AttributeError: 'list' object has no attribute 'getall'

This an older (pre-schema change) version of apProject:

def getProjectIdFromSessionName(sessionname):
    t0 = time.time()
    projectdata = leginon.project.ProjectData()
    projects = projectdata.getProjectExperiments()
    projectid = None
    for i in projects.getall():
        if i['name'] == sessionname:
            projectid = i['projectId']
    if not projectid:
        apDisplay.printError("no project associated with session "+sessionname)
    apDisplay.printMsg("Found project id="+str(projectid)+" for session "+sessionname
        +" in "+apDisplay.timeString(time.time()-t0))
    return projectid

The current version has no getall statement:

def getProjectIdFromSessionName(sessionname):
    t0 = time.time()
    ### get session
    sessiondata = getSessionDataFromSessionName(sessionname)

    ### get project
    projectid = getProjectIdFromSessionData(sessiondata)

    apDisplay.printMsg("Found project id="+str(projectid)+" for session "+sessionname
        +" in "+apDisplay.timeString(time.time()-t0))
    return projectid

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