Feature #4511
closedUse MotionCorr2 program to flip and rotate gain reference
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Description
Since MotionCorr2 does not output frame stack, there is no need to flip the frames. This feature uses the gpu program option to flip/rotate the gain instead. Appion then flip/rotate back the corrected images when correction is made.
Updated by Anchi Cheng over 7 years ago
- Subject changed from Use MotionCorr program to flip and rotate movie frames when possible to Use MotionCorr2 program to flip and rotate gain reference
- Description updated (diff)
- Status changed from New to Assigned
Updated by Anchi Cheng over 7 years ago
9bb163ca added this feature which speeds things up a lot. However, I only tested on flip since that is what I have in hand, please try it out. If you have rotation, check if it is rotation correctly and debug or update here to let me know. Thanks.
Updated by Anchi Cheng over 7 years ago
- Related to Feature #4512: Add MotionCor2 from UCSF to appion added
Updated by Anchi Cheng over 7 years ago
Could all of you watching and using motioncor2 in Appion tell me if I have caused a flip in the aligned images by this ? Somehow instead of flipping the gain as I assume from its option, MotionCor2 is flipping the frames, I think which is fine by me, just need to remove the extra flip I added at the end.
Updated by Anchi Cheng over 7 years ago
Looks like if I use MotionCor2-10-19-2016, the orientation is consistent with frame not flipping, just gain flipped.