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Bug #4597
closedno stack created from rerun of makestack
Start date:
11/14/2016
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:
Description
session 16noc08i
Dogpicker picked 42000 particles.
Stack creation has no output but following warning:
Warning: no images found to process
command run:
/opt/myamisnap/bin/appion makestack2.py --single=start.hed --selectionid=13 --invert --normalize-method=edgenorm --phaseflip --flip-type=ace2imagephase --sort-type=res80 --boxsize=144 --bin=2 --filetype=imagic --forceInsert --description=dam --runname=stack1 --rundir=/gpfs/appion/rice/lkim/16nov08i/stacks/stack1 --preset=en --commit --projectid=256 --session=16nov08i --no-rejects --no-wait --continue --expid=2897 --jobtype=makestack2
Updated by Anchi Cheng over 7 years ago
- Subject changed from no stack created to no stack created from rerun of makestack
- Status changed from New to In Test
- Assignee set to William Rice
- Target version set to Appion/Leginon 3.3
- Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3
Bill,
From the log you have tried this several times with the same runname. Because the nature of the earlier failure involves a rejection of all images, they are considered done and can not be put back by appion to be check if it needs to be processed again. This is why all of them are skipped and gave you no images to process.
If you want to run the same as the same stack in this case (and only if nothing got made into stack, you can remove makestack2.donedict in the rundir and then rerun.
Updated by William Rice over 7 years ago
- Status changed from In Test to Closed
Thanks, working now that I gave the stack a new name
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