Bug #4739: makeDEAlignedSum.py still try to commit trajectory when no-commit is requested - Appion - Electron Microscopy Group

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Bug #4739

closed

makeDEAlignedSum.py still try to commit trajectory when no-commit is requested

Added by Anchi Cheng over 7 years ago. Updated over 6 years ago.

Status:

Closed

Priority:

Normal

Assignee:

Scott Stagg

Category:

Target version:

Appion/Leginon 3.3

Start date:

01/31/2017

Due date:

% Done:

Estimated time:

Affected Version:

Appion/Leginon 3.3

Show in known bugs:

Workaround:

Description

Error when not commiting

Traceback (most recent call last):
  File "/home/acheng/myami/appion/bin/makeDEAlignedSum.py", line 7, in <module>
    makeSum.run()
  File "/home/acheng/myami/appion/appionlib/appionPBS.py", line 153, in run
    results=self.collectResults(jobdict['imgdata'],jobdict['targetdict'])
  File "/home/acheng/myami/appion/appionlib/makeDEAlignedSumLib.py", line 534, in collectResults
    self.commitFrameTrajectoryToDatabase(imgdata,particlelst,particle=None)
  File "/home/acheng/myami/appion/appionlib/makeDEAlignedSumLib.py", line 642, in commitFrameTrajectoryToDatabase
    q['ddstackrun']=self.rundata
  File "/home/acheng/myami/sinedon/data.py", line 526, in __setitem__
    super(Data, self).__setitem__(key, value)
  File "/home/acheng/myami/sinedon/newdict.py", line 79, in __setitem__
    value = validator(value)
  File "/home/acheng/myami/sinedon/data.py", line 326, in validator
    raise ValueError('need instance of %s, got %s instead' % (cls, type(value),))
ValueError: need instance of <class 'appionlib.appiondata.ApDDStackRunData'>, got <type 'dict'> instead