Bug #485
closedmakestack failing on ctf correciton?
100%
Description
trying to make a stack and get failure as:
makeStack.run()
File "/var/tmp/appion-2.0-5_rc1-root/opt/appion/appionlib/appionLoop2.py", line 70, in run
File "/var/tmp/appion-2.0-5_rc1-root/opt/appion/appionlib/appionLoop2.py", line 116, in loopProcessImage
File "/opt/appion/bin/makestack2.py", line 983, in processImage
self.boxedpartdatas, self.imgstackfile, self.partmeantree = self.boxParticlesFromImage(imgdata)
File "/opt/appion/bin/makestack2.py", line 227, in boxParticlesFromImage
imgpath = self.phaseFlipAceTwo(imgpath, imgdata)
File "/opt/appion/bin/makestack2.py", line 496, in phaseFlipAceTwo
cs = bestctfvalue['acerun']['ctftilt_params']['cs']/1000
TypeError: unsubscriptable object
Might be due to ctf problems but thought I had run this correctly?
Updated by Neil Voss almost 14 years ago
- Status changed from New to Assigned
- Assignee set to Neil Voss
This happens when you try to use ACE2 to CTF correct an image estimated by ACE1. We used to NOT allow this, but Gabe added this functionality in. The problem is that the spherical abberation is logged in the database.
So, I am going to have to add to all existing CTF estimators, unfortunately, this will not work in your case. Only on program run in the future. You will have to phase flip the images with EMAN.
Updated by Neil Voss almost 14 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Neil Voss to Amber Herold
- Priority changed from High to Normal
Fixed in r13957. For backward compatibility, it will just skip over the image.
Updated by Neil Voss almost 14 years ago
- Target version set to Appion/Leginon 2.0.0
Updated by Amber Herold almost 14 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Amber Herold to Bridget Carragher
Updated by Bridget Carragher almost 14 years ago
- Status changed from In Test to Closed