Appion

going to do this in the workshop

We will only have this in the trunk and Anna-Clare will have to use the trunk to upload then use the branch for processing.

Neil, you've got a couple of todos listed in the code for getTiltAngle() and getImageDefocus(). Do these need to be addressed or are you waiting for something else before these can be completed?

Sorry about that. They are finished now in r14462. We will need to do more testing of this program.

Is this one that Anna-Clare should test?

Anna-Clare has been testing it, but we need more testers. This program has lots of features that need to be tested.

This works fine for defocus pair uploading.

Tilt series uploading gives unique preset name for each tilt. Not sure if that is a good idea. There will be 120 presets for tomography series this way.

Bugs:
1. normal upload type complained that --images-per-series should not be provided even though it did not.
2. estimated time remaining counted down to -1 image.
3. initial list of image names did not work when there are less than 6 images to upload.
These are fixed in r14767

This script will always create a new session each time it runs and will not work if there are different size of tilt series in one upload session. It also breaks the Leginon rule of having one targetlist per parent image. These are for future consideration if they come up. The web interface is also not written yet.

make the use of uploadImage.py an option in myamiweb/processing/uploadimage.php in r14768 as the gui for the python script.

The options are complicated because uploadImages.py can not replace all functions in imageloader.py

Cases of upload that should be tested:
1. images not in groups
2. image loaded in tilt series group that upload all images in the specified directory.
3. image loaded in defocal series group that upload all images in the specified directory.

I have tested the python script part, Therefore, if the script from show commands can run, it is good for closing this bug until we want to improve it later.

Anyone who has done uploading can test.