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Bug #6277

closed

error resetting coma correction if the first acquisition failed due to a preset or target adjustment movement error

Added by Anchi Cheng over 5 years ago. Updated about 5 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion - Appion/Leginon 3.4
Start date:
11/07/2018
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.4
Show in known bugs:
No
Workaround:

Description

  File "/Users/acheng/myami/leginon/targetwatcher.py", line 320, in processTargetList
    self.processGoodTargets(good_targets)
  File "/Users/acheng/myami/leginon/targetwatcher.py", line 451, in processGoodTargets
    self.resetComaCorrection()
  File "/Users/acheng/myami/leginon/acquisition.py", line 988, in resetComaCorrection
    self.instrument.tem.BeamTilt = self.beamtilt0
AttributeError: 'Acquisition' object has no attribute 'beamtilt0'
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 #1

Updated by Anchi Cheng over 5 years ago

There is a resetComaCorrection call in exception catching for failed navigation move or bad preset assignment. At that point the probe and magnification may not be in the range that beamtilt0 is correct nor should be saved. Code is changed to skip the reset part.

In case of instrument failure at an unknown point, it would be important to check the beam tilt value before start.

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 #2

Updated by Anchi Cheng about 5 years ago

  • Status changed from Assigned to Closed
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