Bug #715
closedUploaded stacks missing boxsize info
100%
Description
When I uploaded a stack made outside of Appion, the boxsize information is missing, so I can't run any kind of alignment. Also, there's no place during uploading to specify whether the stack has already been inverted or normalized, so Appion states that the stack hasn't, even if it has.
Updated by Neil Voss almost 14 years ago
- Status changed from New to Assigned
- Assignee set to Neil Voss
- Affected Version changed from Appion/Leginon 2.0.1 to Pre-2.0
Updated by Neil Voss almost 14 years ago
- Category set to Python scripting
- Target version set to Appion/Leginon 2.0.2
Updated by Neil Voss almost 14 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Neil Voss to Amber Herold
Updated by Amber Herold almost 14 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Amber Herold to Neil Voss
Neil, looks like you added the boxsize, but I don't see anything addressing the inversion or normalization. Should we separate those out to a feature request?
Updated by Neil Voss almost 14 years ago
Yeah those are a Feature request, which I want to classify as won't fix, because they are only important to the makestack program not uploaded stacks, though Becky disagrees with me.
I also put this as Appion 2.0.2, because this completely breaks upload stack for the 2.0 branch.
Updated by Neil Voss almost 14 years ago
- Assignee changed from Neil Voss to Dmitry Lyumkis
Updated by Dmitry Lyumkis over 13 years ago
- Status changed from In Test to Closed
- Target version changed from Appion/Leginon 2.0.2 to Appion/Leginon 2.1.0
- % Done changed from 0 to 100
- Affected Version changed from Pre-2.0 to Appion/Leginon 2.0.1
tested out, boxsize setting works fine. I'm not sure what the inverted / not inverted flag is used for in the database, so I would just suggest putting that label in the description, if need be. you can also tell by the averaged image that is displayed on the stack summary page.