Appion Home » History » Version 51
Amber Herold, 05/21/2010 04:24 PM
| 1 | 35 | Amber Herold | h1. Appion Home |
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| 2 | 11 | Amber Herold | |
| 3 | 50 | Amber Herold | !>http://lh5.google.com/vossman77/RzJbEE3GhuI/AAAAAAAAASY/SSaOA7FZKwI/nramm.jpg?imgdl=1! |
| 4 | 1 | Eric Hou | |
| 5 | 32 | Amber Herold | h2. Documentation |
| 6 | 1 | Eric Hou | |
| 7 | 34 | Amber Herold | [[Appion Manual]] |
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| 9 | 1 | Eric Hou | |
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| 11 | 32 | Amber Herold | |
| 12 | 33 | Amber Herold | |
| 13 | 11 | Amber Herold | |
| 14 | 32 | Amber Herold | h2. Overview |
| 15 | 1 | Eric Hou | |
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| 18 | 51 | Amber Herold | Appion is a "pipeline" for single particle reconstruction integrated with Leginon data acquisition. It consists of a web based user interface linked to a set of python scripts that control several underlying processing packages. These include EMAN, Spider, findem, ACE, and Chimera. All data input and output is managed by MySQL databases. The ultimate goal is to have all control of the processing pipeline managed from the web based user interface and all output from the processing presented using web based viewing tools. These notes are provided as a rough guide to using the pipeline but are not guaranteed to be up to date or accurate. |
| 19 | 6 | Amber Herold | |
| 20 | 32 | Amber Herold | View an [[myami code diagram|overview of the Appion code]] base found in the "myami" repository. |
| 21 | 1 | Eric Hou | |
| 22 | 32 | Amber Herold | |
| 23 | 1 | Eric Hou | |
| 24 | 49 | Amber Herold | --- |