Appion Manual » History » Version 14
Amber Herold, 04/22/2010 12:41 PM
| 1 | 1 | Amber Herold | h1. Appion Manual |
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| 3 | 7 | Amber Herold | |
| 4 | 1 | Amber Herold | # [[An Introduction to Appion]] |
| 5 | 9 | Amber Herold | ## [[What is Appion?]] |
| 6 | ## [[System Requirements]] |
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| 7 | ## [[Authors]] |
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| 8 | 8 | Amber Herold | # [[Complete Installation]] |
| 9 | 9 | Amber Herold | ## [[Instructions for installing CentOS on your computer]] |
| 10 | ## [[Download additional Software]] |
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| 11 | ## [[Database Server Installation]] |
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| 12 | ## [[Processing Server Installation]] |
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| 13 | 14 | Amber Herold | ### [[Install supporting packages]] |
| 14 | ### [[Download Appion Files]] |
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| 15 | ### [[Perform system check]] |
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| 16 | ### [[Install Appion Packages]] |
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| 17 | ### [[Configure leginon.cfg]] |
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| 18 | ### [[Explanation of Sample Names]] |
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| 19 | ### [[Configure sinedon.cfg]] |
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| 20 | ### [[Install External Packages]] |
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| 21 | ### [[Compile FindEM]] |
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| 22 | ### [[Compile Ace2]] |
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| 23 | ### [[Compile Radermacher]] |
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| 24 | ### [[Install Xmipp]] |
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| 25 | ### [[Test Appion]] |
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| 26 | 9 | Amber Herold | ## [[Web Server Installation]] |
| 27 | ## [[Create a Test Project]] |
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| 28 | ## [[Setup Remote Processing]] |
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| 29 | 13 | Amber Herold | # [[Upgrade Instructions]] |
| 30 | 8 | Amber Herold | # [[Appion User Guide]] |
| 31 | 10 | Amber Herold | ## [[Appion and Leginon Database Tools]] |
| 32 | 12 | Amber Herold | ### [[Administration]] |
| 33 | ### [[User Management]] |
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| 34 | ### [[Project DB]] |
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| 35 | ### [[Image Viewers]] |
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| 36 | ### [[LOI - Leginon Observer Interface]] |
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| 37 | ### [[RCT]] |
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| 38 | ### [[Tomography]] |
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| 39 | ### [[Hole Template Viewer]] |
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| 40 | 11 | Amber Herold | ## [[Appion Processing]] |
| 41 | 12 | Amber Herold | ### [[Terminology]] |
| 42 | ### [[Common Workflow]] |
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| 43 | ### [[Processing Cluster Login]] |
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| 44 | ### [[Particle Selection]] |
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| 45 | ### [[CTF Estimation]] |
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| 46 | ### [[Import Tools]] |
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| 47 | ### [[Image Assessment]] |
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| 48 | 8 | Amber Herold | ### [[Region Mask Creation]] |