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Appion Manual » History » Version 16

Amber Herold, 04/22/2010 12:46 PM

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h1. Appion Manual
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# [[An Introduction to Appion]]
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## [[What is Appion?]]
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## [[System Requirements]]
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## [[Authors]]
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# [[Complete Installation]]
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## [[Instructions for installing CentOS on your computer]]
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## [[Download additional Software]]
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## [[Database Server Installation]]
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## [[Processing Server Installation]]
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### [[Install supporting packages]]
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### [[Download Appion Files]]
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### [[Perform system check]]
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### [[Install Appion Packages]]
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### [[Configure leginon.cfg]]
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### [[Explanation of Sample Names]]
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### [[Configure sinedon.cfg]]
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### [[Install External Packages]]
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### [[Compile FindEM]]
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### [[Compile Ace2]]
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### [[Compile Radermacher]]
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### [[Install Xmipp]]
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### [[Test Appion]]
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## [[Web Server Installation]]
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### [[Differences between Linux flavors]]
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### [[Install Web Server Prerequisites]]
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### [[Configure php.ini]]
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### [[Install Apache Web Server]]
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### [[Check php information]]
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### [[Install the MRC PHP Extension]]
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### [[Install the Web Interface]]
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### [[Potential Problems]]
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## [[Create a Test Project]]
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## [[Setup Remote Processing]]
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# [[Upgrade Instructions]]
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# [[Appion User Guide]]
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## [[Appion and Leginon Database Tools]]
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### [[Administration]]
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#### [[Groups]]
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#### [[Users]]
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#### [[Instruments]]
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#### [[Default Settings]]
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#### [[Calibrations]]
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#### [[Applications]]
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#### [[Goniometer]]
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### [[User Management]]
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### [[Project DB]]
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### [[Image Viewers]]
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### [[LOI - Leginon Observer Interface]]
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### [[RCT]]
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### [[Tomography]]
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### [[Hole Template Viewer]]
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## [[Appion Processing]]
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### [[Terminology]]
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### [[Common Workflow]]
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### [[Processing Cluster Login]]
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### [[Particle Selection]]
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### [[CTF Estimation]]
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### [[Import Tools]]
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### [[Image Assessment]]
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### [[Region Mask Creation]]