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Developers guide » History » Version 37

Amber Herold, 08/02/2011 03:30 PM

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h1. Developers guide
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This guide is primarily intended to help noobs to both Appion and Programming in general get up and running in the development environment that we have created at AMI.
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It is a good place to add notes, however basic, that may help someone else accomplish a task related to Appion software development.
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Parts of this guide are specific to machines and the environment that we have at AMI. Our apologies.
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# *System Overview*
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## Leginon
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### Scope
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### Windows Machine
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## Appion
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### Web Parts - web server
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### Python Parts - processing server
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### 3rd party apps
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## Clusters
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## "Myami code module diagram":http://emg.nysbc.org/projects/appion/wiki/Myami_code_diagram 
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# *Development Tools*
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## [[appion:AMI Redmine Quick Start Guide|Redmine quick start]]
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### Issue reporting and life-cycle
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#### [[appion:Issue Workflow Tutorial]]: A guide to setting the Issue status.
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### Adding Documentation
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## [[AMI_Eclipse_Quick_Start_Guide|Eclipse]]
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## [[Subversion]] (SVN)
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### Checking your code into the main trunk
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# *Languages and Technology*
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## html, css, PHP, Python, Javascript, mySQL
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## [[Coding standards|best practices for these]] 
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## [[Object Oriented Programming]]
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## [[Useful shell commands]]
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## [[MySQL_Notes|Getting started with MySQL]]
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# *Installing Appion for development*
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## Running the code from your sandbox
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# *Adding a new program to the pipeline*
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## General Instructions
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### Processing parts (Python)
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#### database access
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### Web Parts (PHP)
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#### launch page
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#### reporting page
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##### [[Using basicReport.inc]] for very simple PHP report pages
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#### database accesss
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## Adding a refinement method (single and multi model)
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### [[Adding refine python parts|Python wrapper for 3rd party programs]] (Anchi)
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### [[Adding refine runjob|Modifications to runJob.py]] (Christopher)
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### [[how to add a new refinement method|Uploading results to the databse]] (Dmitry)
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### [[Refine_Refactor_documentation|Adding the user interface]] (Amber)
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# *Testing*
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## [[Appion Testing|Automated testing]]
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## [[How to test upload images with your own sandbox]]
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## [[How to run manual picking and mask making]]
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# *[[Error Handling]]*
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# *Adding pop-up Help*
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# Where to find help
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# [[Common variables used]]