EMDB to Model » History » Version 5
Anke Mulder, 07/08/2010 05:47 PM
| 1 | 1 | Amber Herold | h1. EMDB to Model |
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| 2 | |||
| 3 | 2 | Pick-Wei Lau | The user is able to retrieve emdb models from the Electron Microscopy Data Bank. |
| 4 | |||
| 5 | 3 | Anke Mulder | h2. General Workflow: |
| 6 | 1 | Amber Herold | |
| 7 | 4 | Anke Mulder | *To launch:* |
| 8 | 3 | Anke Mulder | |
| 9 | 2 | Pick-Wei Lau | # The user enters the EMDB ID |
| 10 | # The user decides the resolution of the density model (typically filter to 15 - 25 Angstrom resolution) |
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| 11 | 1 | Amber Herold | # The user selects the symmetry of the model |
| 12 | 2 | Pick-Wei Lau | |
| 13 | 3 | Anke Mulder | *Output:* |
| 14 | 2 | Pick-Wei Lau | |
| 15 | # Once the model is generated, it will be deposited under "3d Density Volumes" |
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| 16 | 1 | Amber Herold | # The user then assess the quality of the model and decides whether to convert the volume into an initial model |
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| 19 | 3 | Anke Mulder | h2. Notes, Comments, and Suggestions: |
| 20 | 1 | Amber Herold | |
| 21 | 3 | Anke Mulder | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
| 22 | 1 | Amber Herold | |
| 23 | ______ |
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| 24 | 3 | Anke Mulder | |
| 25 | 5 | Anke Mulder | [[PDB to Model|< PDB to Model]] | [[Upload Particles|Upload Particles >]] |