Install Appion Packages » History » Version 37
Carl Negro, 09/10/2015 01:27 PM
1 | 28 | Anchi Cheng | h1. Install Appion Packages |
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3 | 32 | Anchi Cheng | h2. Install the appion python package |
4 | 28 | Anchi Cheng | |
5 | 35 | Anchi Cheng | {{include(Install_Appion_bin_shared)}} |
6 | 28 | Anchi Cheng | |
7 | 32 | Anchi Cheng | h2. Install all the myami python packages _except appion_ using the following script: |
8 | 1 | Amber Herold | |
9 | {{include(appion:Install Appion Packages Shared)}} |
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10 | 32 | Anchi Cheng | |
11 | 37 | Carl Negro | |
12 | h3. Check permissions: |
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14 | Verify that the root user has executable permission for rctacquisition.py. It may be necessary to run: |
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16 | <pre> |
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17 | chmod 755 ./leginon/rctacquisition.py |
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18 | </pre> |
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20 | 32 | Anchi Cheng | h2. Set additional appion environment variables |
21 | 28 | Anchi Cheng | |
22 | Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work. |
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23 | For bash: |
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24 | <pre> |
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25 | export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace |
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26 | </pre> |
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27 | or C shell |
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28 | <pre> |
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29 | setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace |
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30 | </pre> |
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31 | 2 | Amber Herold | |
32 | ______ |
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34 | 36 | Amber Herold | |
35 | 34 | Amber Herold | [[Download Appion Files|< Download Appion/Leginon Files]] | [[Perform system check|Perform system check >]] |
36 | 36 | Amber Herold | |
37 | 1 | Amber Herold | ______ |