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Install SIMPLE » History » Version 4

Amber Herold, 08/24/2012 12:07 PM

1 1 Amber Herold
h1. Install SIMPLE
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<pre>mkdir /sw/packages/SIMPLE
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cd /sw/packages/SIMPLE
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mkdir downloads
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cd downloads
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wget http://simple.stanford.edu/binaries/simple_linux_120521.tar.gz
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cd ..
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tar zxf downloads/simple_linux_120521.tar.gz
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cd simple_linux_120521
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./simple_config.pl</pre>type "local" when prompted.
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14 4 Amber Herold
This actually modifies the files in simple_linux_120521 to configure them with the correct path.  This cannot later be modified by running ./simple_config.pl again on the same directory, so if you want to install somewhere other than /sw/packages/SIMPLE/simple_linux_120521, then you have to unpack a new copy from the tar.gz and run simple_config.pl once it is in the new location.
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16 4 Amber Herold
To set up your environment to use the executables in this new SIMPLE installation, you need both "apps" and "bin" subdirectory in your PATH.  For example:<pre>export PATH=$PATH:/sw/packages/SIMPLE/simple_linux_120521/apps:/sw/packages/SIMPLE/simple_linux_120521/bin</pre>
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WARNING: I notice that some commands in the bin directory are fairly generic names, so just be aware of this when adding this to PATH.  For example, there is a command "align", so hopefully there is no other "align" command which conflicts with this.