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Myami code diagram

A diagram of the current Myami code modules

  • Sinedon
    • Generates queries.
    • Uses Python to generate mysql
  • Appion
    • Core image processing code.
    • Does not use numextension but does use radermacher
    • Contains Ace2 objective C which replaces Matlab
    • Mostly Python code.
  • Leginon
    • Microscope control
    • Installed Application
    • Includes a GUI
    • This is the Python part of Leginon
  • Imageviewer
    • Should be moved into the leginon directory
    • Contains Python code
  • Pyscope
    • Contains Python code
  • Comarray
    • C code
    • Pyscope needs this in certain cases
  • Myamiweb
    • Used to be called dbem
    • Contains Leginon and Appion web parts
    • Includes the PHP part of Leginon
    • The old “project” code has been migrated here and phased out.
  • Phpami
    • Contains PHP code
    • Denis made these 3 include files separate so they would not be public.
    • These files will eventually be moved to myamiweb and this folder will phase out.
  • Php_mrc
    • PHP extension to myamiweb to read mrc files
    • Contains C code
  • Numextension
    • C Code wrapped in Python
    • Implements canny edge detection
    • Used extensively
  • Radermacher
    • C Code
    • Could be merged with numextension or appion
  • Libcv
    • C Code
    • Computer vision library
  • Pyami
    • Common Python libraries used by appion and leginon
    • Image processing
    • Randoms

Updated by Amber Herold over 14 years ago · 4 revisions