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Package alias table¶
Those not mentioned here uses the original names in the call.
| program package name | version | appion executable alias | Accessible |
| MotionCor2 | 1.0.2 | motioncor2 | shell |
| motioncorr v2.0 from Purdue | 2.0 | dosefgpu_driftcorr | shell |
| DE_process_frames.py | 2.7.1 | deProcessFrames.py | pythonpath |
| ctffind4 | 4.1.5 | ctffind4 | shell |
| Gctf | 1.06 | gctfCurrent | shell |
| ctftilt | 1.5 | ctftilt.exe | shell |
| FindEM | 20/10/01 | findem64.exe | shell |
| Gautomatch | 0.53 | gautomatch | shell |
| Spider | 18.10 | spider | shell |
| frealign | 9.11 | frealign_v9.exe and frealign_v9_mp.exe | shell |
| xmipp2 cl2d* | 2.4 | xmipp_mpi_class_averages | shell |
| xmipp3 cl2d* | 3.1 | xmipp_classify_CL2D | shell |
| EMAN1 proc2d | 1.9 | proc2d | shell |
- default environment is xmipp2. All other xmipp functions wraps around xmipp2.
- xmipp3 conflict with xmipp2 is resolved in appion/bin/runXmipp3CL2D.py with a line of code
csh -c 'modulecmd python load xmipp/3.1'
Change it if desired.
Updated by Anchi Cheng over 6 years ago · 2 revisions