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Processing Server External Packages Installation » History » Version 27

Anchi Cheng, 12/13/2018 10:10 AM

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{{include(Package_executable_alias_name_in_Appion)}}
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h2. Installation
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[[External Package requirement of Appion scripts]]
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h3. Required for preprocessing pipeline up to stack making for Relion/CryoSparc
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# [[Configure .appion.cfg]]
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# [[Install External Packages]]
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# [[Install_motioncor2_shared|MotionCor2]]
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# [[Install Gctf]]
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# Install CtfFind. See [[Install Grigorieff lab software]]
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h3. Recommended for preprocessing pipelin particle picking
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# [[Compile FindEM]]
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h3. Required for 2D classification and other functions
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# [[Install EMAN]] (Only works for CentOS 6)
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# [[Install EMAN2]]
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# [[Install SPIDER]]
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# [[Install Xmipp]] (Xmipp2 Only works for CentOS 6)
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# [[Install UCSF Chimera]]
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# [[Install Ace2]]
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# [[Install Imod]]
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# [[Install Protomo2]]
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# [[Install EM Hole Finder]]
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h3. Older packages, install only if you still want to use them
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# [[Install dosefgpu_driftcorr|MotionCorr]] (optional)
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# [[Install SIMPLE]]
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h3. Testing
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# [[Test Appion]]