Appion

Test Appion¶

• If appion was installed using setup.py you are ready to test out appion.

• Run the following script to test import of Appion libraries and binaries:
  

  cd myami/appion/
  ./check.sh
  

  
  NOTE
  You can ignore EMAN, MATLAB, and UCSF Chimera errors at this point.
   
  What about: raise LeginonConfigError('set IMAGE_PATH in leginonconfig.py')
  leginon.leginonconfig.LeginonConfigError: set IMAGE_PATH in leginonconfig.py

You need to edit leginon.cfg.

• Run the following script to test the installation of 3rd party processing packages:
  

  cd myami/appion/test
  python check3rdPartyPackages.py