Upgrade From 20x » History » Version 8
Eric Hou, 10/28/2010 02:34 PM
1 | 1 | Amber Herold | h1. Upgrade From 2.0.x |
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3 | 2 | Amber Herold | h2. Download myami 2.1.x source code |
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5 | {{include(appion:Download_Appion_Files_Shared)}} |
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6 | 3 | Amber Herold | |
7 | 7 | Amber Herold | h2. Install Appion Packages |
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9 | h3. Install all the myami python packages _except appion_ using the following script: |
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11 | <pre> |
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12 | 8 | Eric Hou | cd /your_download_area/myami |
13 | 7 | Amber Herold | sudo ./pysetup.sh install |
14 | </pre> |
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16 | That will install each package, and report any failures. To determine the cause of failure, see the generated log file "pysetup.log". If necessary, you can enter a specific package directory and run the python setup command manually. For example, if sinedon failed to install, you can try again like this: |
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17 | 1 | Amber Herold | |
18 | 7 | Amber Herold | <pre> |
19 | 8 | Eric Hou | cd /your_download_area/myami/sinedon |
20 | 7 | Amber Herold | sudo python setup.py install |
21 | </pre> |
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23 | h3. Install the Appion python package |
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25 | *Important:* You need to install the Appion 2.1.x packages to the *same location* that you installed 2.0.x packages. You may have used a flag shown below _--install-scripts=/usr/local/bin_ in your original installation. If you did, you need to use it this time as well. You can check if you installed your packages there by browsing to /usr/local/bin and looking for ApDogPicker.py. If the file is there, you should use the flag. if the file is not there, you should remove the flag from the command to install Appion to the default location. |
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26 | 1 | Amber Herold | |
27 | 7 | Amber Herold | The pysetup.py script above did not install the appion package. Since the appion package includes many executable scripts, it is important that you know where they are being installed. To prevent cluttering up the /usr/bin directory, you can specify an alternative path, typically /usr/local/bin, or a directory of your choice that you will later add to your PATH environment variable. Install appion like this: |
28 | <pre> |
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29 | 8 | Eric Hou | cd /your_download_area/myami/appion |
30 | 7 | Amber Herold | sudo python setup.py install --install-scripts=/usr/local/bin |
31 | </pre> |
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33 | 5 | Amber Herold | |
34 | h2. Run Database Update Script |
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36 | Running the following script will correct a problem that affects Leginon users. See issue #942 for more information. |
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37 | <pre> |
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38 | cd /your_download_area/myami/dbschema |
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39 | python leginondbUpdate-r14897.py |
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40 | </pre> |
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41 | 6 | Amber Herold | |
42 | ___ |
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44 | [[Upgrade_Instructions| Upgrade Instructions ^]] |
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46 | ______ |