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Useful shell commands » History » Version 4

Amber Herold, 09/23/2011 11:10 AM

1 1 Amber Herold
h1. Useful shell commands
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h3. check the status of a job
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# ssh to the processing server
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# <pre>qstat -au YOUR_USER_NAME</pre>
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# will list your jobs
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h3. make a folder writable
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<pre> chmod -R g+rw eman_recon14</pre>
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h3. kill a process
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# Log into the machine it is running on
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<pre>ssh fly</pre>
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# Look for processes with your user name
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<pre>ps -ef |grep [your_username]</pre>
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# Kill the process using the number in the first column after your username
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<pre>kill [process id]</pre>
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# If the process was a copy, remove the destination folder
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<pre>rm [destination folder]</pre>
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# list system stats
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<pre>top</pre>
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h3. Kill a job running through the job manager
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* use *qdel* <job number>