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Version220 » History » Version 13

Amber Herold, 02/02/2011 12:11 PM

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h1. Appion/Leginon 2.2
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Appion/Leginon 2.2 will focus on the Extensibility of Appion. 
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The goal is to make it easy for outside labs to add new processing modules to the Image Pipeline.
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Time Frame ~6 months. Release by June 2011.
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"View the current 2.2 Deliverable status":http://emg.nysbc.org/issues?query_id=26
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# *PHP_MRC* (#669 #680 #314) (Jim & Eric)
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# *Automated testing* #1005 (Amber) (2 weeks)
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## Develop test scripts where possible #1007
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## Establish a permanent test data set in Data00
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# *Expand Auto-Installer* #1015 (Christopher, Eric)
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## multiple servers #1016
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## multiple platforms #1017 - Mac (highest priority), Fedora, Suse, Ubuntu (Eric)
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## more options (Advanced vs Novice user) #1018
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## yum, rpm ? #1019
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## add processing packages to installer (spider, frealign, eman)
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# *Add modules to pipeline* 
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## Add Protomo2 (Amber, Eric) #1026
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## Add new version of Chimera to existing code to learn what is involved #82 #25
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## Chose other modules to add after code changes
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## See if StokesLabProcedure will integrate their stuff as a Beta test
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## Arne adding XMIPP reconstruction
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## Lauren adding Phoelix
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# *Refactor code* (Eric, Amber)
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## Identify trouble spots 
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### Refactor and develop framework for reconstructions
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## Focus on readability and modularity
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### Reduce terminology overloading
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### Work toward a plugin architecture (look for generalizations, api)
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# *Create a developers tutorial* #1022
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## Add a developers tab to the appion website with links to all the resources available #1021
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## Define coding standards (#10)
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### python doc string viewer/editor (#162)
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### Edit several key files (such as often copied ones) to use standards rigorously as samples #1012
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### PHP standards doc #1013
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### python standards doc #231
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# *Features for public cluster* (release with 2.1.1)
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## Users need to be able to run imageuploader remotely. (#274)
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## Need to be able to define max number of procs per node for each processing host - Advanced version (#366)
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## Add single user sign-on functionality for SDSC roll-out (#1010)
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## Investigate how data will move between AMI and SDSC (#1011)
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## Having a different password for the imageviewer login and the cluster login is confusing. #364
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## Create Appion job submit agent server #1023 (Eric)
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### One central job submit point and user (optional).
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### Detail report time, user, status, for each job.
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# *Complete Appion Wrapper* (#692 #675 #676)
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h3. Moved to low priority:
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# *Automated testing* #1005 (Amber) (4 weeks)
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## Develop unit tests where applicable #1006
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## Look into automated GUI test apps #1008
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## Static testing for code standards? #1009
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# *Better error reporting* 
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## Biggest problem is jobs management which could be helped with an agent
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## Show jobs that are errors (#603)
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## Create an error log (#75)
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## Remote cluster recons should not return as done if job failed (#531)
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# *Improve help tools*
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## Add links to redmine wiki help pages to appion pages (#666)
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## Add pop up dialogs to report pages as well (#516)
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## Image viewer tool tips
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# *Create or use an object-relational mapping for PHP* #1020 (Eric)
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## Look into Zend library
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### "example":http://framework.zend.com/manual/en/zend.db.select.html
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# *Discuss a strategy to modify database schema without effect external developers.*
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## we will wait and address this when someone is ready to make a change.
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# *clean up web interface*
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## Remove inconsistencies in web interface (#41 #670)
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## Add session name to window so that window are not reloaded from another session (#512)
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## Remove select project box in getproject page. (#14)
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## Implement sorting algorithm into project management tool. (#13)
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## Job Status updates missing on some tools (#994)
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## Reorganize the last column in the view project page. (#15)
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# *Leginon*
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## Feature to measure focus change in a random direction. (#226)
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## import preset by searching for session that uses an application (#654)
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## Allow averaging of multiple focus measurements (#225)
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## Leginon image viewer should cache the FFT images as well. (#217)
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## target queue editor (#214)
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# *misc*
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## Data Location tool-find data and push it to external drive (#954)
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## Snapshots of projection views for uploaded models. (#857)
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## Put variables from config.php into the database (#699)
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