Version220 » History » Version 14
Amber Herold, 02/02/2011 12:11 PM
1 | 1 | Amber Herold | h1. Appion/Leginon 2.2 |
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3 | 5 | Amber Herold | Appion/Leginon 2.2 will focus on the Extensibility of Appion. |
4 | 1 | Amber Herold | The goal is to make it easy for outside labs to add new processing modules to the Image Pipeline. |
5 | 5 | Amber Herold | Time Frame ~6 months. Release by June 2011. |
6 | 1 | Amber Herold | |
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8 | 11 | Amber Herold | "View the current 2.2 Deliverable status":http://emg.nysbc.org/issues?query_id=26 |
9 | 5 | Amber Herold | |
10 | 13 | Amber Herold | # *PHP_MRC* (#669 #680 #314) (Jim & Eric) |
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12 | # *Automated testing* #1005 (Amber) (2 weeks) |
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13 | 5 | Amber Herold | ## Develop test scripts where possible #1007 |
14 | ## Establish a permanent test data set in Data00 |
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16 | # *Expand Auto-Installer* #1015 (Christopher, Eric) |
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17 | ## multiple servers #1016 |
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18 | ## multiple platforms #1017 - Mac (highest priority), Fedora, Suse, Ubuntu (Eric) |
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19 | 1 | Amber Herold | ## more options (Advanced vs Novice user) #1018 |
20 | 5 | Amber Herold | ## yum, rpm ? #1019 |
21 | ## add processing packages to installer (spider, frealign, eman) |
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23 | 13 | Amber Herold | # *Add modules to pipeline* |
24 | 1 | Amber Herold | ## Add Protomo2 (Amber, Eric) #1026 |
25 | 5 | Amber Herold | ## Add new version of Chimera to existing code to learn what is involved #82 #25 |
26 | 12 | Amber Herold | ## Chose other modules to add after code changes |
27 | 5 | Amber Herold | ## See if StokesLabProcedure will integrate their stuff as a Beta test |
28 | 13 | Amber Herold | ## Arne adding XMIPP reconstruction |
29 | ## Lauren adding Phoelix |
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30 | 5 | Amber Herold | |
31 | 14 | Amber Herold | # *Refactor Reconstruction code* (Eric, Amber) |
32 | 13 | Amber Herold | ## Identify trouble spots |
33 | 5 | Amber Herold | ## Focus on readability and modularity |
34 | 1 | Amber Herold | ### Reduce terminology overloading |
35 | 5 | Amber Herold | ### Work toward a plugin architecture (look for generalizations, api) |
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37 | # *Create a developers tutorial* #1022 |
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38 | ## Add a developers tab to the appion website with links to all the resources available #1021 |
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39 | ## Define coding standards (#10) |
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40 | ### python doc string viewer/editor (#162) |
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41 | ### Edit several key files (such as often copied ones) to use standards rigorously as samples #1012 |
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42 | ### PHP standards doc #1013 |
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43 | ### python standards doc #231 |
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44 | |
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45 | # *Features for public cluster* (release with 2.1.1) |
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46 | ## Users need to be able to run imageuploader remotely. (#274) |
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47 | ## Need to be able to define max number of procs per node for each processing host - Advanced version (#366) |
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48 | ## Add single user sign-on functionality for SDSC roll-out (#1010) |
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49 | ## Investigate how data will move between AMI and SDSC (#1011) |
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50 | ## Having a different password for the imageviewer login and the cluster login is confusing. #364 |
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51 | 1 | Amber Herold | ## Create Appion job submit agent server #1023 (Eric) |
52 | ### One central job submit point and user (optional). |
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53 | ### Detail report time, user, status, for each job. |
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55 | |
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56 | # *Complete Appion Wrapper* (#692 #675 #676) |
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58 | 13 | Amber Herold | |
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60 | h3. Moved to low priority: |
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62 | # *Automated testing* #1005 (Amber) (4 weeks) |
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63 | ## Develop unit tests where applicable #1006 |
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64 | ## Look into automated GUI test apps #1008 |
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65 | ## Static testing for code standards? #1009 |
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66 | |
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67 | 5 | Amber Herold | # *Better error reporting* |
68 | ## Biggest problem is jobs management which could be helped with an agent |
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69 | ## Show jobs that are errors (#603) |
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70 | ## Create an error log (#75) |
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71 | ## Remote cluster recons should not return as done if job failed (#531) |
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72 | |
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73 | # *Improve help tools* |
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74 | ## Add links to redmine wiki help pages to appion pages (#666) |
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75 | ## Add pop up dialogs to report pages as well (#516) |
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76 | ## Image viewer tool tips |
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78 | # *Create or use an object-relational mapping for PHP* #1020 (Eric) |
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79 | ## Look into Zend library |
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80 | ### "example":http://framework.zend.com/manual/en/zend.db.select.html |
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82 | # *Discuss a strategy to modify database schema without effect external developers.* |
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83 | ## we will wait and address this when someone is ready to make a change. |
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84 | |
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85 | # *clean up web interface* |
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86 | ## Remove inconsistencies in web interface (#41 #670) |
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87 | ## Add session name to window so that window are not reloaded from another session (#512) |
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88 | ## Remove select project box in getproject page. (#14) |
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89 | ## Implement sorting algorithm into project management tool. (#13) |
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90 | ## Job Status updates missing on some tools (#994) |
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91 | ## Reorganize the last column in the view project page. (#15) |
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92 | |
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93 | # *Leginon* |
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94 | ## Feature to measure focus change in a random direction. (#226) |
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95 | ## import preset by searching for session that uses an application (#654) |
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96 | ## Allow averaging of multiple focus measurements (#225) |
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97 | ## Leginon image viewer should cache the FFT images as well. (#217) |
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98 | ## target queue editor (#214) |
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99 | |
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100 | # *misc* |
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101 | ## Data Location tool-find data and push it to external drive (#954) |
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102 | ## Snapshots of projection views for uploaded models. (#857) |
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103 | ## Put variables from config.php into the database (#699) |
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105 | 1 | Amber Herold | |
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107 | [[appion:Version220|<Edit this page>]] |