Windows Package Requirement¶
General¶
You Will need internet access to get these:¶
Python and Support Packages (Note that python 2.7 must be used to match window installers of myami modules):¶
You should generally be able to use the most recent versions of these packages that are available from their respective web sites. Just be sure to always get the version that is compatible with Python 2.7. However, you must use the exact version for numpy. If you are having trouble with the most recent version, try to use the specific versions we include in http://emg.nysbc.org/projects/leginon/files
Use pyMySQL for leginon 3.6 and above instead of MySQL Python client for both win32 and 64.
(trunk, beta, 3.3 and up) GIT client used for check out from our repository¶
We have switched to git revision control recently. If you want to install the newest changes, you need to use the files from git repository.
You can clone our repository with
- During the installation, select "Checkout as-is, commit as-is" option at the step regarding automated translation of CRLF and LF line endings if you are a developer and may commit changes.
- Default is fine with the rest of the options.
Packages from NRAMM¶
Most of the subpackages from NRAMM are obtained through our repository. You have two option depending on your situation
- Clone from git repository (newer version)
- Copy your git clone or svn checkout from your linux box if you do not have internet access on instrument PC.
Cloning myami git repository¶
We recommend using git bash to do so which gives most freedom in configuration and so that you can use unix syntax.
git for windows cloning
- Right Click at the folder where it will contain your clone and choose "Git Bash Here" to start the shell window.
- With Windows XP "Git Bash Here" does not appear with right-click. In this case, you can start git bash from Start menu/Programs/Git/Git Bash and move the folder created to where you want it to be.
To checkout (called clone in git) the package from NRAMM:¶
See Acquiring NRAMM Repository files for different examples and match the repository with what you do on the Linux side.
numextension windows installer¶
Because numextension and would require extra compilers if you build them yourself, we have created Windows installers for them for python 2.7 and made them available at /redmine/projects/leginon/files.
These are the current Leginon python 2.7 compiled packages you should install by opening them on Windows.¶
Windows Installation That apply to all instruments >
Additional Requirement on the microscope
FEI Tecnai/Titan¶
| TEM Scripting or Tecnai Scripting |
Request this when purchasing the microscope |
Required |
| Low Dose Server Library |
Should come with the microscope if low dose kit was purchased |
Required only if you want to use low dose kit with Leginon's Manual Application |
| Advanced TEM Scripting |
Request this when purchasing the microscope |
Required if you have Selectris or Falcon Camera |
JEOL¶
Depending on setup. See JEOL External3 setup
Additional Requirement for cameras
Gatan camera controlled by Digital Micrograph installed on FEI Tecnai/Titan microscope computer.¶
| program/package |
notes |
| TecnaiCCD.dll |
|
Gatan K2/K3 camera and its associated Orius camera controlled by Digital Micrograph installed on stand-alone 64-bit computer.¶
SerialEM DigitalMicrograph Plug-in. Get only what you need for your Digital Micrograph version.
Note: DM = Digital Micrograph; GMS = Gatan Microscopy Suite
32bit versions also exit, but not for GMS 2.31 and above
TIA-controlled camera (FEI Eagle, FEI Falcon, and Gatan Orius used with Falcon¶
| program/package |
notes |
| Tia.dll |
(Should come with the microscope) |
Tietz camera¶
| program/package |
notes |
| CAMC4.exe |
(Should come with the camera) |
Direct Electron camera¶
Film (Only for FEI Tecnai/Titan)¶
| program/package |
notes |
| adaexp.exe |
This is the exposure adaptor. Contact Max Otten: mto@feico.com and request for adaexp.exe that works with your version of Tecnai user interface program. |
Installation >