... processStack: Box size: 160
 ... processStack: Memory used per part: 100.0 kB
 ... processStack: Max particles in memory: 10001
 ... processStack: Particles allowed in memory: 500
 ... processStack: Number of particles in stack: 52595
 ... processStack: Particle loop num chunks: 106
 ... processStack: Particle loop step size: 496
 ... processStack: Splitting 52595 particles into 107 folders with 496 particles per folder
 ... processStack: partnum 1 to 496 of 52595
 ... processStack: partnum 497 to 992 of 52595, 4 min 4 sec remain
 ... processStack: partnum 993 to 1488 of 52595, 4 min 17 sec remain
 ... processStack: partnum 1489 to 1984 of 52595, 4 min 18 sec remain
 ... processStack: partnum 1985 to 2480 of 52595, 4 min 20 sec remain
 ... processStack: partnum 2481 to 2976 of 52595, 4 min 18 sec remain
 ... processStack: partnum 2977 to 3472 of 52595, 4 min 17 sec remain
 ... processStack: partnum 3473 to 3968 of 52595, 4 min 18 sec remain
 ... processStack: partnum 3969 to 4464 of 52595, 4 min 15 sec remain
 ... processStack: partnum 4465 to 4960 of 52595, 4 min 14 sec remain
 ... processStack: partnum 4961 to 5456 of 52595, 4 min 10 sec remain
 ... processStack: partnum 5457 to 5952 of 52595, 4 min 8 sec remain
 ... processStack: partnum 5953 to 6448 of 52595, 4 min 5 sec remain
 ... processStack: partnum 6449 to 6944 of 52595, 4 min 3 sec remain
 ... processStack: partnum 6945 to 7440 of 52595, 3 min 60 sec remain
 ... processStack: partnum 7441 to 7936 of 52595, 3 min 58 sec remain
 ... processStack: partnum 7937 to 8432 of 52595, 3 min 55 sec remain
 ... processStack: partnum 8433 to 8928 of 52595, 3 min 53 sec remain
 ... processStack: partnum 8929 to 9424 of 52595, 3 min 50 sec remain
 ... processStack: partnum 9425 to 9920 of 52595, 3 min 47 sec remain
 ... processStack: partnum 9921 to 10416 of 52595, 3 min 45 sec remain
 ... processStack: partnum 10417 to 10912 of 52595, 3 min 42 sec remain
 ... processStack: partnum 10913 to 11408 of 52595, 3 min 39 sec remain
 ... processStack: partnum 11409 to 11904 of 52595, 3 min 36 sec remain
 ... processStack: partnum 11905 to 12400 of 52595, 3 min 34 sec remain
 ... processStack: partnum 12401 to 12896 of 52595, 3 min 31 sec remain
 ... processStack: partnum 12897 to 13392 of 52595, 3 min 29 sec remain
 ... processStack: partnum 13393 to 13888 of 52595, 3 min 26 sec remain
 ... processStack: partnum 13889 to 14384 of 52595, 3 min 23 sec remain
 ... processStack: partnum 14385 to 14880 of 52595, 3 min 21 sec remain
 ... processStack: partnum 14881 to 15376 of 52595, 3 min 18 sec remain
 ... processStack: partnum 15377 to 15872 of 52595, 3 min 15 sec remain
 ... processStack: partnum 15873 to 16368 of 52595, 3 min 13 sec remain
 ... processStack: partnum 16369 to 16864 of 52595, 3 min 10 sec remain
 ... processStack: partnum 16865 to 17360 of 52595, 3 min 7 sec remain
 ... processStack: partnum 17361 to 17856 of 52595, 3 min 5 sec remain
 ... processStack: partnum 17857 to 18352 of 52595, 3 min 2 sec remain
 ... processStack: partnum 18353 to 18848 of 52595, 2 min 60 sec remain
 ... processStack: partnum 18849 to 19344 of 52595, 2 min 57 sec remain
 ... processStack: partnum 19345 to 19840 of 52595, 2 min 54 sec remain
 ... processStack: partnum 19841 to 20336 of 52595, 2 min 53 sec remain
 ... processStack: partnum 20337 to 20832 of 52595, 2 min 50 sec remain
 ... processStack: partnum 20833 to 21328 of 52595, 2 min 48 sec remain
 ... processStack: partnum 21329 to 21824 of 52595, 2 min 45 sec remain
Warning: overflow encountered in long_scalars


Traceback (most recent call last):
  File "/programs/m/appion/2.2/sortJunkStack.py", line 154, in <module>
    sortJunk.start()
  File "/programs/m/appion/2.2/sortJunkStack.py", line 50, in start
    apXmipp.breakupStackIntoSingleFiles(fn_oldstack)
  File "/programs/i386-mac/python/2.7/lib/python2.7/site-packages/appionlib/apXmipp.py", line 130, in breakupStackIntoSingleFiles
    breaker.start(stackfile)
  File "/programs/i386-mac/python/2.7/lib/python2.7/site-packages/appionlib/apImagicFile.py", line 837, in start
    stackdata = readImagic(stackfile, first=first, last=last, msg=False)
  File "/programs/i386-mac/python/2.7/lib/python2.7/site-packages/appionlib/apImagicFile.py", line 163, in readImagic
    images = readImagicData(datafilename, headerdict, first, numpart)
  File "/programs/i386-mac/python/2.7/lib/python2.7/site-packages/appionlib/apImagicFile.py", line 239, in readImagicData
    f.seek(partbytes*(firstpart-1))
IOError: [Errno 22] Invalid argument