
| <input file> | Images to be processed |
| <output file> | Processed output |
| <dang> | Angular step between images |
| [indccl] | Writes individual CCL images to ccl.hed |
| [fixang=<ang>] | If the common-line orientation is known, specify it here |
| [mask=<pixel radius>] | Mask type 4 (step cut off to zero), defaults to xSize()/3 |
| [skip=<image0[,imageN]>] | The image index in the input file to skip for alignment. |
| [maxshift=<pixels] | Maximum shift in translational alignment, defaults to xSize()/4 |
| [vertical] | Align images so that tilt axis is vertical. |
tiltseries particle.hed particle.tilt.hed 10
This program is still somewhat experimental
This proram is used for analysis of tilt-series, ie - tomography. This program will take a tilt series of a single particle, mutually align them, determine the tilt axis, and write the aligned images to a new file with Eulers.