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# Project Tracker Status Priority Subject Author Assignee Updated
17778 Leginon Feature New Normal Smart Leginon Active Learning Alex Noble 09/30/2024 10:34 AM Actions
16331 Leginon Feature New Normal Add IceT adjustment for Cold FEG flashing William Rice 03/12/2024 05:54 PM Actions
16316 Leginon Bug New Normal "Add random amount to acquisition" also adjusts the focus target Eugene Chua William Rice 03/11/2024 10:57 AM Actions
16176 Leginon Bug New Normal infinite recursion on Beam_Tilt_Image cesar mena Anchi Cheng 02/08/2024 12:08 PM Actions
16172 Leginon Bug New Normal Hardcoded values in myamiweb/slurmHost.py can't be changed via config John Pellman 02/08/2024 09:09 AM Actions
16052 Leginon Feature New Normal optionally hide "-all microscopes" dropdown cesar mena 01/23/2024 03:06 PM Actions
15557 Appion Bug New Normal canceled autoRelauncher.py causes later autoRelauncher.py to get stuck for starting Anchi Cheng Anchi Cheng 10/20/2023 01:59 AM Actions
15146 Leginon Feature New Normal Smart Leginon - add Jenks grouping and option to randomize Ptolemy scores, other features William Rice 08/03/2023 04:48 PM Actions
15143 Leginon Feature New Normal Leginon - increase number of autofill targets to 14 William Rice 08/03/2023 01:48 PM Actions
14847 Leginon Feature Assigned Normal tfs utapi implementation Anchi Cheng Anchi Cheng 06/03/2023 12:16 AM Actions
14751 Leginon Task New Normal Smart Leginon Autoscreen: please remove the broken squares from Autoscreen selection. Session m23may031l Aygul Ishemgulova 05/08/2023 11:47 AM Actions
14509 Leginon Feature Assigned Normal tools to update target order through ptolemy active-learning score recalculation Anchi Cheng Anchi Cheng 03/20/2023 10:51 PM Actions
14487 Leginon Feature Assigned Normal Display ptolemy learning progress over time Anchi Cheng Anchi Cheng 03/20/2023 09:07 PM Actions
14467 Leginon Feature New Normal TFS Selectris support Anchi Cheng 03/09/2023 09:04 AM Actions
14393 Leginon Feature New Normal faster image-shift data collection Anchi Cheng Anchi Cheng 12/30/2023 08:20 PM Actions
14378 Leginon Feature Assigned Normal Speed up download of CTF data with beam tilt William Rice William Rice 03/08/2023 03:03 PM Actions
14363 Leginon Feature Assigned Normal script to continue autoscreen session if crashed during the run Anchi Cheng Anchi Cheng 02/16/2023 11:40 PM Actions
14359 Leginon Feature New Normal update tiltgroup_wrangler.py to work under cryoSparc 4 William Rice 02/14/2023 10:01 PM Actions
14358 Leginon Bug Assigned Normal changes needed to make redux work under python3 William Rice William Rice 03/02/2023 04:25 PM Actions
14357 Leginon Feature Assigned Normal speed up ctf graphs and drift reports, make graph frame white William Rice William Rice 03/16/2023 11:41 AM Actions
14356 Leginon Feature New Normal add energy filter offset control to presets William Rice 02/14/2023 04:43 PM Actions
14349 Leginon Bug Assigned Normal mosaic tile adding thread does not lock autofinderlock well. Anchi Cheng Anchi Cheng 02/14/2023 12:32 AM Actions
14348 Leginon Feature Assigned Normal limit number of images taken in a session Anchi Cheng Anchi Cheng 02/14/2023 12:17 AM Actions
14340 Leginon Bug Assigned Normal targets not processed in active learning square targeting when mosaic scale is changed Anchi Cheng Anchi Cheng 02/09/2023 10:40 PM Actions
14305 Leginon Bug Assigned Normal targets from simulated targets can not be sorted Anchi Cheng 02/03/2023 04:55 PM Actions
14304 Leginon Bug New Normal new targets on grid atlas can not go ahead of old ones that are not yet processed even if sorted to do so until the old ones are done Anchi Cheng Anchi Cheng 02/03/2023 01:55 PM Actions
14212 Leginon Feature Assigned Normal set defocus and stage z of successful focuser results and skip autofocusing if such operation works Anchi Cheng Anchi Cheng 02/14/2023 12:25 AM Actions
14195 Leginon Bug Assigned Normal Autoscreen fails to set data from old session because of missing C2ApertureSizeData in the old session Anchi Cheng Anchi Cheng 01/24/2023 05:07 PM Actions
14158 Leginon Feature Assigned Normal disable auto normalization and then noramlize all at the end of preset setting to fei scopes Anchi Cheng Anchi Cheng 02/01/2023 12:41 PM Actions
14157 Leginon Feature Assigned Normal skip further focus steps if it is good enough Anchi Cheng Anchi Cheng 01/27/2023 12:27 AM Actions
14149 Leginon Bug Assigned Normal Focus step in focus sequence may get saved to focus sequence if user click "+" without inputting a name Anchi Cheng Anchi Cheng 01/18/2023 11:55 PM Actions
14148 Leginon Feature In Test Normal leginon version cesar mena Anchi Cheng 01/18/2023 11:40 PM Actions
14145 Leginon Feature Assigned Normal label a session for using autoscreen in webviewer and grid management services if present. Anchi Cheng Anchi Cheng 01/27/2023 12:22 AM Actions
14140 Leginon Feature Assigned Normal pysetup.sh with appion Anchi Cheng Anchi Cheng 01/17/2023 02:57 PM Actions
14133 Leginon Bug Assigned Normal correctorclient loads norm image array from file on Falcon EER sum image even though it does not use it Anchi Cheng Anchi Cheng 01/16/2023 08:26 PM Actions
14113 Leginon Feature Assigned Normal ptolemy active learning implementation Anchi Cheng Anchi Cheng 10/31/2023 02:18 PM Actions
14092 Leginon Feature Assigned Normal Use fei image queuing on Falcon4 Anchi Cheng 02/01/2023 12:32 PM Actions
14081 Leginon Bug Assigned Normal dose and align image in similar look can not find gain/dark correction images on K2/K3 Anchi Cheng Anchi Cheng 01/12/2023 12:07 PM Actions
14043 Leginon Bug Assigned Normal referenced settings not export/imported Anchi Cheng Anchi Cheng 01/02/2023 12:44 AM Actions
14020 Leginon Bug Assigned Normal "source" does not work with Debian 11 default sh Anchi Cheng Anchi Cheng 01/12/2023 12:12 PM Actions
13970 Leginon Feature New Normal Add option to randomise targets within holes William Rice 12/07/2022 04:56 PM Actions
13969 Leginon Feature New Normal sort collection of exposure samples by ice thickness William Rice 12/07/2022 04:56 PM Actions
13899 Leginon Feature Assigned Normal run autoRelauncher.py on the whole auto session set Anchi Cheng Anchi Cheng 01/12/2023 12:16 PM Actions
13893 Leginon Bug Assigned Normal can not set INSTRUMENTS_CFG_PATH to be used to overwrite default configuration of instruments.cfg Anchi Cheng Anchi Cheng 11/15/2022 12:50 PM Actions
13884 Leginon Bug Assigned Normal aperture does not always finish changing when aperture is selected between two values Anchi Cheng Anchi Cheng 11/11/2022 04:30 PM Actions
13859 Leginon Bug Assigned Normal instrument loaded too late for autoscreen first preset settings and grid insertion Anchi Cheng Anchi Cheng 11/10/2022 08:50 PM Actions
13855 Leginon Support Assigned Normal current de.py is not compatible with server version1.0 Anchi Cheng Anchi Cheng 11/08/2022 06:32 PM Actions
13742 Leginon Support Assigned Normal update checkPackages.py Anchi Cheng Anchi Cheng 10/25/2022 10:40 AM Actions
13581 Appion Feature New Normal imarchive - an archival process based on the imcached logic cesar mena cesar mena 10/03/2022 02:36 PM Actions
13578 Appion Feature Assigned Normal redux: configurable archive (webimg) loader cesar mena Anchi Cheng 11/16/2022 01:21 PM Actions
13386 Leginon Feature Assigned Normal suppoer ceta2 continuous acquisition Anchi Cheng Anchi Cheng 09/06/2022 01:00 AM Actions
13359 Leginon Feature Assigned Normal design myami-python3 autoinstaller for leginon Anchi Cheng Sargis Dallakyan 09/03/2022 07:04 PM Actions
13351 Leginon Bug Assigned Normal reduce autoscreen memory usage Anchi Cheng 08/24/2022 05:56 PM Actions
13338 Appion Bug Assigned Normal myami-python3 installation failed in leginon Anchi Cheng Anchi Cheng 08/22/2022 10:43 AM Actions
13334 Leginon Bug Assigned Normal redux not using fftw in python3 Anchi Cheng cesar mena 09/06/2022 02:26 PM Actions
13283 Leginon Feature Assigned Normal retrieve extrator voltage and beam current when available Anchi Cheng Anchi Cheng 08/12/2022 02:13 PM Actions
13246 Appion Bug Assigned Urgent clean up .bak files in myami-abonham Anchi Cheng Andrew Bonham 08/08/2022 06:26 PM Actions
13226 Leginon Bug Assigned Normal mrc.py isSwap needs to be kept in python3 Anchi Cheng Andrew Bonham 08/05/2022 02:18 PM Actions
12958 Leginon Bug Assigned Normal node selector process bitmap location is black when started and the rest state does not cover the process frames Anchi Cheng 07/05/2022 01:08 PM Actions
12936 Appion Bug Assigned Normal mrc header string concatenate error with empty field Anchi Cheng Anchi Cheng 06/30/2022 12:47 PM Actions
12874 Leginon Feature New Normal Add aperture used in the image viewer data tree Ed Eng 06/16/2022 11:05 AM Actions
12861 Appion Feature Assigned Normal display direct detector frame positions from database record Anchi Cheng Anchi Cheng 06/23/2022 04:18 PM Actions
12483 Appion Bug Assigned High DogPicker can not find any peaks. Anchi Cheng Sargis Dallakyan 04/20/2022 07:28 PM Actions
12144 Leginon Task Assigned Normal myami-3.6 release Anchi Cheng Anchi Cheng 02/28/2022 07:25 PM Actions
12047 Appion Feature Assigned Normal Adding TiltGroup Wrangler to Appion Sargis Dallakyan Sargis Dallakyan 04/12/2022 10:26 AM Actions
11992 Leginon Bug New Normal Use highest mean intensity in a quarter size of the image to calculate aperture-limited scattering ice thickness Anchi Cheng 02/03/2022 01:27 PM Actions
11990 Appion Bug Assigned Normal motioncor2 does not neet bft option. Anchi Cheng Anchi Cheng 02/03/2022 12:43 PM Actions
11985 Leginon Support Assigned Normal use test script to check comtypes safearray.py replacement Anchi Cheng Anchi Cheng 02/02/2022 10:00 PM Actions
11967 Leginon Bug Assigned Normal Image shift targeting between two mags ends up shifting in opposite direction in very specific case Anchi Cheng Anchi Cheng 01/28/2022 11:34 PM Actions
11878 Leginon Feature New Normal auto launch appion scripts for new session based on those run on an old one Anchi Cheng Anchi Cheng 03/15/2022 06:06 PM Actions
11850 Appion Bug Assigned Normal jpgmaker.py gives black images Anchi Cheng 01/13/2022 05:33 PM Actions
11775 Leginon Bug Assigned Normal import_leginon_ref needs ddinfo Anchi Cheng Anchi Cheng 01/01/2022 03:36 PM Actions
11613 Leginon Bug Assigned Normal input('') to eval(input('')) conversion for python3 Anchi Cheng 12/02/2021 12:35 AM Actions
11612 Appion Bug Assigned Normal newer numpy dtype deprecated Int vs int Anchi Cheng Anchi Cheng 12/01/2021 11:46 PM Actions
11608 Appion Support Assigned Normal allow unlock failure as a warning to move on to the next loop Anchi Cheng Anchi Cheng 11/30/2021 08:43 PM Actions
11607 Appion Bug Assigned Normal printError removes image locks from all parallel runs and causes unlock error in appionLoops Anchi Cheng 11/30/2021 08:32 PM Actions
11290 Appion Feature Assigned Normal utility to check where a module is imported from Anchi Cheng Anchi Cheng 10/18/2021 09:55 PM Actions
11272 Leginon Feature In Test Normal option to retract automated objective aperture during auto grid insertion in TEM controller node Anchi Cheng 10/26/2022 04:05 PM Actions
11098 Leginon Bug New Normal Tomography images not storing pixeltype and pixelsize Clint Potter 09/26/2021 05:37 PM Actions
10987 Leginon Feature Assigned Normal Leginon: speed up ZLP ice thickness William Rice William Rice 10/26/2022 06:17 PM Actions
10875 Leginon Task New Normal run square finding as multiprocess process Anchi Cheng Anchi Cheng 08/19/2021 01:37 AM Actions
10371 Leginon Bug Assigned Urgent rawtransfer.py may transfer frames to the wrong session if both cameras save its timestamped file as the same name Anchi Cheng Anchi Cheng 06/23/2021 07:35 PM Actions
10358 Leginon Bug Assigned Urgent acquisition not waiting for image processing if not displaying image Anchi Cheng Anchi Cheng 06/20/2021 03:20 PM Actions
10232 Leginon Bug Assigned Normal K3 camera saved frame orientation not correctly assigned Anchi Cheng 05/17/2021 02:56 AM Actions
10230 Leginon Bug Assigned Normal tomography tilt series adjust target not between the two groups of tilts Anchi Cheng Anchi Cheng 05/16/2021 03:01 AM Actions
10125 Leginon Bug In Test Normal rawtransfer.py recursive chown causes slow down with large session Anchi Cheng Anchi Cheng 04/21/2021 02:55 AM Actions
10031 Leginon Bug Assigned Normal python 3 integer math conversion Anchi Cheng Anchi Cheng 03/18/2021 06:15 PM Actions
10028 Leginon Bug New Normal sort function need cmp_to_key conversion Anchi Cheng Anchi Cheng 03/18/2021 01:12 AM Actions
10027 Leginon Task New Normal convert local import for python 3 Anchi Cheng Anchi Cheng 03/18/2021 12:12 AM Actions
10026 Leginon Bug Assigned Normal wxpython 4.0 pyevent does change attribute inplace when passed between modules Anchi Cheng 03/18/2021 12:03 AM Actions
9946 Leginon Task New Normal wxpython conversion to 4.0 Anchi Cheng Anchi Cheng 03/02/2021 03:41 PM Actions
9858 Leginon Bug Assigned Normal imcache pow.jpg binned before power spectrum calculation show artifact and wrong resolution scale on rectangular image. Anchi Cheng Anchi Cheng 01/26/2021 09:24 PM Actions
9845 Leginon Feature Assigned Normal python 3 pip usage Anchi Cheng Anchi Cheng 01/25/2021 10:46 PM Actions
9844 Leginon Bug Assigned Normal some string method are no longer valid in python 3 Anchi Cheng Anchi Cheng 01/25/2021 10:25 PM Actions
9843 Leginon Bug Assigned Normal Configparser.SafeConfigParser is configparser.ConfigParser in python 3.2 Anchi Cheng Anchi Cheng 01/25/2021 10:58 PM Actions
9836 Appion Feature Assigned Normal read 4-bit int mrc files Anchi Cheng 01/21/2021 07:53 PM Actions
9818 Leginon Bug New Urgent web imageviewer stuck in server internal error if a session with no image is loaded. Anchi Cheng Anchi Cheng 01/19/2021 09:49 PM Actions
9803 Appion Bug In Test Normal error when clicking "processing" on web viewer Scott Stagg Scott Stagg 01/15/2021 06:59 PM Actions
9787 Appion Bug Assigned Normal when there is processinghost setup, errors of Null processing host show up before anything is selected or logged in. Anchi Cheng Anchi Cheng 01/08/2021 09:12 PM Actions
9771 Leginon Bug Assigned Normal Falcon4 base frame time is not quite right Anchi Cheng Anchi Cheng 01/14/2021 08:50 PM Actions
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