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Bug #1678

closed

Protomo 2 should not be the default tomo alignment method since it is not completed

Added by Anchi Cheng about 12 years ago. Updated about 10 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Amber Herold
Category:
-
Target version:
Appion/Leginon 2.2.0
Start date:
03/22/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

Until we complete the implementation and testing, imod shift-only will be the defaul. Would like to use leginon result, but that needs work to pull it out of protomo method.

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 #1

Updated by Anchi Cheng about 12 years ago

  • Status changed from New to Assigned

r16479 and r16480 makes leginon correlation the default alignment method. It is a bit hacky since I just force it in python code to do protomo cycle 0 so it still has some protomo parameters that means nothing. Will do for now.

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 #2

Updated by Anchi Cheng about 12 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Anchi Cheng to Amber Herold

r16480 and r16481 do the same for tomoautorecon since raptor (the former default) is not fully tested while Leginon correlation works all the time as long as the tilt series is successfully collected.

I will teach John to test these.

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 #3

Updated by Amber Herold about 10 years ago

  • Status changed from In Code Review to Closed
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