Appion

First of all, if you download the daily snapshot of EMAN1 (not 1.9) it works fine on CentOS 6.

But, I removed the batchboxer part, so as far as I can tell the only thing left is:

(1) applyctf (lines 334-392), which is only used if EMAN1 CTF correction is checked, otherwise it uses ACE2

(2) particle filtering (lines 561-590), e.g., low pass, high pass, and convert to spider -- which if we are going to rewrite, we might as well use python instead of proc2d.

(3) merging of image stack into big stack (lines 561-590) -- already a python function for this, but it lacks the particle filtering from #2.

(4) conversion to spider for filters.phaseFlipImage() (lines 539-552) -- why are we even using proc2d when we have mrc.py and spider.py in pyami

Hmm, I will try it again tomorrow. When I upgraded to CentOS 6.2, I got the library error - downloaded the daily snapshot and it worked fine.

Hi Anchi, I ran sudo yum update on my CentOS 6.2 machine downloaded the daily snapshot x86_64-cluster from EMAN1 site and everything works fine. Tried proc2d a few different ways. Tried it on Fedora 16 as well, no problems. RHEL 6.3 is still in beta, so CentOS 6.3 is not out yet.

http://ncmi.bcm.edu/ncmi/software/eman/software_78/manage_addProduct/NCMI/attendee_factory?myname=eman.daily.linux64-cluster.tar.gz

Hi Anchi, just as I sent this to you, the artifacts showed up in my max like alignment after the stack was converted. But the stack is completely fine... hmm.