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Feature #2727

closed

support tiff lzw format writing from SerialEMCCD for raw frames from K2 dose fractionation

Added by Anchi Cheng about 10 years ago. Updated over 5 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Oliver Clarke
Category:
-
Target version:
Appion - Appion/Leginon 3.4
Start date:
04/18/2014
Due date:
% Done:

0%

Estimated time:
Deliverable:

Description

Available in SerialEMCCD 2.30 and up.

It should reduce the file size by at least 2 fold.

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 #1

Updated by Anchi Cheng about 10 years ago

  • Assignee set to Anchi Cheng

r18193 adds Christoph Gohlke's tifffile.c to repository so that we can distribute it.

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 #2

Updated by Anchi Cheng over 6 years ago

  • Status changed from New to Assigned

added the correct flag.

To use, add to dmsem.cfg

in section [k2]

SAVE_LZW_TIFF_FRAMES = True

This option breaks rawtransfer.py since it recognizes mrc files only. Will need to add tiff option there, and to frame alignment. As is, it is an unsupported option.

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 #3

Updated by Anchi Cheng over 5 years ago

Added tif rawtransfer.py and MotionCor2 framee alignment support.

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 #4

Updated by Anchi Cheng over 5 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Anchi Cheng to Oliver Clarke
  • Target version set to Appion/Leginon 3.4

This is in beta now.

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 #5

Updated by Anchi Cheng over 5 years ago

  • Status changed from In Test to Closed
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