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Feature #4144

open

use Camera setup frame rotation to transform defects, references, and output in makeDEAlignedSum.py

Added by Anchi Cheng about 8 years ago. Updated almost 8 years ago.

Status:
In Code Review
Priority:
Normal
Assignee:
Scott Stagg
Category:
-
Target version:
Appion/Leginon 3.3
Start date:
05/03/2016
Due date:
% Done:

0%

Estimated time:

Description

Needed when camera is rotated

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 #1

Updated by Anchi Cheng about 8 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Anchi Cheng to Scott Stagg
  • Priority changed from High to Normal
  • Target version set to Appion/Leginon 3.3

r19714 adds the feature for rotation at 90 or 270 degrees.
r19715 cleans it up and add all rotations and pixels

Not doing flipping transforms.

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 #2

Updated by Scott Stagg about 8 years ago

For reasons, I haven't figured out, this operation does not correctly fix bad rows and cols on my end. I added an option to override query of bad pix using command line options.

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 #3

Updated by Anchi Cheng almost 8 years ago

Scott.

We experience similar problem. The bad row or column sometimes offset by one. I can prove that the bad row and column are correctly identified when I read and correct it with the reader and algorithm used in makeDDRawFrameStack.py

r19772 replaces your

ax.tick_params(axis='both',bottom='off', left='off',top='off',right='off',labelbottom='off',labeltop='off',labelright='off', labelleft='off')

with the one that I can run without failing with the CentOS 6 yum installed 0.99 version of matplotlib. Hope that does not affect your side.

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