Feature #4144
open
use Camera setup frame rotation to transform defects, references, and output in makeDEAlignedSum.py
Added by Anchi Cheng about 8 years ago.
Updated about 8 years ago.
Description
Needed when camera is rotated
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Scott Stagg
- Priority changed from High to Normal
- Target version set to Appion/Leginon 3.3
r19714 adds the feature for rotation at 90 or 270 degrees.
r19715 cleans it up and add all rotations and pixels
Not doing flipping transforms.
For reasons, I haven't figured out, this operation does not correctly fix bad rows and cols on my end. I added an option to override query of bad pix using command line options.
Scott.
We experience similar problem. The bad row or column sometimes offset by one. I can prove that the bad row and column are correctly identified when I read and correct it with the reader and algorithm used in makeDDRawFrameStack.py
r19772 replaces your
ax.tick_params(axis='both',bottom='off', left='off',top='off',right='off',labelbottom='off',labeltop='off',labelright='off', labelleft='off')
with the one that I can run without failing with the CentOS 6 yum installed 0.99 version of matplotlib. Hope that does not affect your side.
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