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Feature #4489

closed

Add phase plate options to GCTF

Added by Carl Negro over 7 years ago. Updated over 6 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
Carl Negro
Category:
-
Target version:
Appion/Leginon 3.3
Start date:
09/30/2016
Due date:
% Done:

0%

Estimated time:

Description

GCTF fails right now because it can't find the 'extra_phase_shift' parameter. Also, the newest version released September 29 supports phase plate parameters, these should be added to the Appion GUI.

Related issues 1 (0 open — 1 closed)

Related to Appion - Bug #4481: ctffind 3 not workingClosedWilliam Rice09/29/2016

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 #1

Updated by Anchi Cheng over 7 years ago

  • Related to Bug #4481: ctffind 3 not working added
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 #2

Updated by Anchi Cheng over 7 years ago

Fixed the key error this morning for Issue #4481. Will show up tomorrow.

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 #3

Updated by Anchi Cheng over 7 years ago

  • Status changed from New to Assigned
  • Priority changed from Normal to Urgent

f2c180b5 does not save "extra_phase_shift" into database because it is not parsed from the log file.

In ctffind4.py, the key value pair is

'extra_phase_shift':  float(bits[4]), # radians

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 #4

Updated by Anchi Cheng over 7 years ago

  • Description updated (diff)
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 #5

Updated by Anchi Cheng over 7 years ago

  • Tracker changed from Bug to Feature
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 #6

Updated by Anchi Cheng over 6 years ago

  • Status changed from Assigned to Closed
  • Target version set to Appion/Leginon 3.3

works.

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