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Feature #652

open

memory limit for eman job is too restricted

Added by Anchi Cheng almost 14 years ago. Updated over 13 years ago.

Status:
New
Priority:
Normal
Assignee:
-
Category:
-
Target version:
Appion/Leginon Future Version
Start date:
06/10/2010
Due date:
% Done:

100%

Estimated time:

Description

Looking back old emanrecon.jobs, #PBS -l mem is not defined and therefore is limited by the available memory on the node. My GroEL jobs won't run to 1 deg angular increment with the current calulated memory limit. I assume that it is because there is overhead that we did not take into account in the calculation.

Bill said some nodes on garibaldi have 47gb of memory for jobs. Once I edited my job to higher limit, it went through. We should make this option available on myamiweb

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 #1

Updated by Anchi Cheng almost 14 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Anchi Cheng to Neil Voss
  • % Done changed from 0 to 100

commit option to limit the memory by a fixed number. r14333 in trunk. No need to go into 2.0.0

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 #2

Updated by Neil Voss almost 14 years ago

  • Assignee changed from Neil Voss to Anchi Cheng

I do not understand why this is necessary.

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 #3

Updated by Neil Voss almost 14 years ago

  • Target version changed from Appion/Leginon 2.0.1 to Appion/Leginon 2.1.0
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 #4

Updated by Anchi Cheng over 13 years ago

  • Status changed from In Code Review to New
  • Assignee deleted (Anchi Cheng)
  • Target version changed from Appion/Leginon 2.1.0 to Appion/Leginon Future Version

What is checked in is a work around for the memory problem. Should revisit the issue on garibaldi in the future.

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