Electron Microscopy Group

04/18/2019

02:41 PM Appion Bug #7282 (Closed): appion CTFFIND error

I am getting this error past two weeks when I try to do CTF estimation through appion. Please see the attached screen... Venkata Dandey

07/10/2017

12:31 PM Leginon Feature #5074 (New): Saving the Image contrast for "hl'" preset images

Hi Anci,
A small feature that can help target better areas(avoiding bad ice) within a hole of "hl" preset image. D... Venkata Dandey

12/01/2016

09:46 AM Appion Bug #4566: Relion 2D tool in appion uploads wrong results

Hi, this time I am trying a different dataset which is more heterogeneous to test as anchi suggested.
But somehow ... Venkata Dandey

11/09/2016

11:06 AM Appion Bug #4566: Relion 2D tool in appion uploads wrong results

Thanks Anchi, it looks correct now. I have attached the screenshot here, I tried GDH sample this time which I know it... Venkata Dandey

11/04/2016

03:58 PM Appion Bug #4566: Relion 2D tool in appion uploads wrong results

oops!! Anchi, I did not read this statement carefully - " The forcing of aligning the reference step might may be par... Venkata Dandey

03:54 PM Appion Bug #4566: Relion 2D tool in appion uploads wrong results

Achi it is a good point to do a preprocess the stack using "relion_preprocess" command. But here the relion results I... Venkata Dandey

03:46 PM Appion Bug #4566: Relion 2D tool in appion uploads wrong results

I tried the EMAN2 e2display (attached), which in my experience never displays the relion results in a proper way and ... Venkata Dandey

02:03 PM Appion Bug #4566 (In Code Review): Relion 2D tool in appion uploads wrong results

I tried to use the relion 2D tool in appion and in curiosity was checking the results inside the folder through comma... Venkata Dandey

10/14/2015

09:18 PM Appion Bug #3660: Mean/StdDev filtering of stack not working with virtual stack

I had the same issue... Actually some times the stack created shows like "*generate some missing information*" in the... Venkata Dandey

10/08/2015

11:46 AM Appion Bug #3646 (Closed): maxlikelihood run cannot take large number of processors

when submitting the maxlikelihood job with 256 processors, it does not submit the job and throws up the error (screen... Venkata Dandey