Electron Microscopy Group

07/12/2018

10:29 AM Leginon Bug #5892: exposure pause time does not change

I attach the print screen image. Zhening Zhang

10:28 AM Leginon Bug #5892 (Closed): exposure pause time does not change

I change the wait time before exposure to 220s. The pause time for all my collection is 2.5 sec. This happen to Krios... Zhening Zhang

01/05/2018

09:20 AM Appion Bug #5413 (Closed): lm-bfgs Particle Polisher bugs

I got these error messages when I submit a job:
/opt/myamisnap/bin/appion polishStack.py --commit --micrographs_per_... Zhening Zhang

01/02/2018

01:53 PM Appion Bug #5405 (Closed): Rubinstein particle alignment web gui did not validate stack nor ddstack

I submit a job to do a per particle alignment in Appion. I got these error msg:
[zzhang@SEMC-head micrographs_hd]$... Zhening Zhang

12/14/2016

03:02 PM Appion Bug #4665 (New): 2d

I could not run Xmipp 2 Clustering 2D Alignment. The directory is /gpfs/appion/zzhang/16nov25e/align/cl2d12.
Here i... Zhening Zhang

12/06/2016

02:00 PM Appion Bug #4651 (Duplicate): Xmipp

I run Xmipp job using Appion in cluster. The job finished. However there is no output in the Appion interface.
The j... Zhening Zhang

10/28/2016

11:08 AM Leginon Wiki edit: RCT_run_protocol_from_a_user (#6)

Zhening Zhang

10/20/2016

11:05 AM Appion Bug #4540 (New): template picking error message

When I resume one of my old template picking run, there is an error message. The directory is:-rundir=/gpfs/appion/zz... Zhening Zhang

10/14/2016

01:42 AM Appion Bug #4522 (Closed): can not find cu7.5

gctf is not working in SEMC cluster. show error msg: can not find cuda 7.5. Zhening Zhang

01:39 AM Appion Bug #4521 (New): empty log file

when I run ctffind4 in relion1.4. The log file is empty. Zhening Zhang