|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
**power thread lock in effect
|
|
*****************************************
|
|
redux server started: Wed Aug 13 16:48:40 2014
|
|
subversion revision: None
|
|
host: 127.0.0.1, port: 55123
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(25827024,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(25827088,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(25827216,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(25827024,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(25827088,shape=(512, 512))
|
|
|
|
NOT IN MEMORY: Read(25826960,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
|
|
Running Read(25826960,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
Running Shape(25827088,shape=(512, 512))
|
|
1407973744.78
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(25827216,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(25828176,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(25828112,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(25826896,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(25828176,shape=(512, 512))
|
|
|
|
NOT IN MEMORY: Read(25827216,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
|
|
Running Read(25827216,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
Running Shape(25828176,shape=(512, 512))
|
|
1407973746.02
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26538768,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26538960,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26539152,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26538896,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(26538960,shape=(512, 512))
|
|
|
|
Running Scale(26538896,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407973759.47
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26539216,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(26539600,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26539728,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26539216,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(26539600,shape=(512, 512))
|
|
|
|
Running Scale(26539216,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407973760.41
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26539792,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26540176,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26540112,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26540048,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=128x128&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26540304,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26540112,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(26540048,shape=(128, 128))
|
|
|
|
IN MEMORY: Read(26539792,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
|
|
NOT IN FILE: Read(26539792,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
|
|
Running Shape(26540048,shape=(128, 128))
|
|
1407973883.45
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=1024x1024&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26540816,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26539984,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(26540496,shape=(1024, 1024))
|
|
|
|
IN MEMORY: Read(26540560,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
|
|
NOT IN FILE: Read(26540560,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,info=False)
|
|
|
|
Running Shape(26540496,shape=(1024, 1024))
|
|
1407973883.63
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26540880,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(26541136,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26541328,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN MEMORY: Scale(26540880,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
Running Format(26541328,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
1407974097.59
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipes/format.py", line 86, in put_result
|
|
f.write(result)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26670800,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26670864,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=128x128&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26671056,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26670800,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(26670864,shape=(128, 128))
|
|
|
|
Running Scale(26670800,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407974124.06
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26671120,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26671504,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=1024x1024&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26671632,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(26671120,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(26671504,shape=(1024, 1024))
|
|
|
|
Running Scale(26671120,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407974124.11
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26671696,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(26672080,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(26672208,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26671696,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(26672208,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(26672272,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26671696,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26672272,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(26672336,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN MEMORY: Scale(26671696,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
Running Format(26672336,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
1407974143.58
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipes/format.py", line 86, in put_result
|
|
f.write(result)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26672848,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26672912,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(26673104,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26672848,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(26673104,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(26672016,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
**power thread lock in effect
|
|
Traceback (most recent call last):
|
|
File "/usr/bin/reduxd", line 4, in <module>
|
|
|
|
redux.server.main()
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 80, in main
|
|
|
|
start_server(host, port)
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 57, in start_server
|
|
|
|
server = Server((host,port), RequestHandler)
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 412, in __init__
|
|
|
|
self.server_bind()
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 423, in server_bind
|
|
|
|
self.socket.bind(self.server_address)
|
|
File "<string>", line 1, in bind
|
|
socket
|
|
.
|
|
error
|
|
:
|
|
[Errno 98] Address already in use
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(26672848,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(26672016,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(26672592,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
calc_fftw3:
|
|
local wisdom imported
|
|
|
|
**power thread lock in effect
|
|
*****************************************
|
|
redux server started: Wed Aug 13 17:19:44 2014
|
|
subversion revision: None
|
|
host: 127.0.0.1, port: 55123
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54511312,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(54511376,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(54511504,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN FILE: Format(54511504,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54511120,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(54511696,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(54591568,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN FILE: Format(54591568,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591888,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(54591824,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(54591696,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591824,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(54591760,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(54591696,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591760,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(54591888,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(54591696,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591888,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(54591824,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(54591696,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591824,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(54591760,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(54591824,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(54591888,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=128x128&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(54591696,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(54591760,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(54591888,shape=(128, 128))
|
|
|
|
NOT IN MEMORY: Read(54591824,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
|
|
Running Read(54591824,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
Running Shape(54591888,shape=(128, 128))
|
|
1407975654.82
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=1024x1024&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(55375248,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(54592272,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
NOT IN MEMORY: Shape(55375056,shape=(1024, 1024))
|
|
|
|
IN MEMORY: Read(55374928,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
|
|
NOT IN FILE: Read(55374928,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,info=False)
|
|
|
|
Running Shape(55375056,shape=(1024, 1024))
|
|
1407975655.02
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55375312,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55375568,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55375504,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55375440,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=1024x1024&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(55375760,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(55375568,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(55375440,shape=(1024, 1024))
|
|
|
|
Running Scale(55375568,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407975656.38
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=128x128&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(55376336,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
NOT IN MEMORY: Scale(55376016,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
IN MEMORY: Shape(55376080,shape=(128, 128))
|
|
|
|
Running Scale(55376016,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
1407975656.39
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipe.py", line 90, in put_result
|
|
cPickle.dump(result, f, cPickle.HIGHEST_PROTOCOL)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55376400,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55376784,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(55376912,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
calc_fftw3:
|
|
local wisdom imported
|
|
|
|
**power thread lock in effect
|
|
Traceback (most recent call last):
|
|
File "/usr/bin/reduxd", line 4, in <module>
|
|
|
|
redux.server.main()
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 80, in main
|
|
|
|
start_server(host, port)
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 57, in start_server
|
|
|
|
server = Server((host,port), RequestHandler)
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 412, in __init__
|
|
|
|
self.server_bind()
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 423, in server_bind
|
|
|
|
self.socket.bind(self.server_address)
|
|
File "<string>", line 1, in bind
|
|
socket
|
|
.
|
|
error
|
|
:
|
|
[Errno 98] Address already in use
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
calc_fftw3:
|
|
local wisdom imported
|
|
|
|
**power thread lock in effect
|
|
Traceback (most recent call last):
|
|
File "/usr/bin/reduxd", line 4, in <module>
|
|
|
|
redux.server.main()
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 80, in main
|
|
|
|
start_server(host, port)
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 57, in start_server
|
|
|
|
server = Server((host,port), RequestHandler)
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 412, in __init__
|
|
|
|
self.server_bind()
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 423, in server_bind
|
|
|
|
self.socket.bind(self.server_address)
|
|
File "<string>", line 1, in bind
|
|
socket
|
|
.
|
|
error
|
|
:
|
|
[Errno 98] Address already in use
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55376400,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(55376912,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(55376976,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55376400,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55376976,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(55377040,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55376400,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55377040,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=128x128&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(55376720,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN MEMORY: Scale(55376400,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
Running Format(55376720,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
1407975833.76
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipes/format.py", line 86, in put_result
|
|
f.write(result)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55494352,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc,frame=0,info=True)
|
|
Running Format(55494416,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02.mrc&shape=1024x1024&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
NOT IN MEMORY: Format(55494608,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
IN MEMORY: Scale(55494352,scalemax=5.0,scalemin=-5.0,scaletype=stdev)
|
|
|
|
Running Format(55494608,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
1407975833.78
|
|
Traceback (most recent call last):
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 39, in run_process
|
|
result = pipeline.process(**kwargs)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipeline.py", line 147, in process
|
|
results.put(done, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 40, in put
|
|
return self._put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 35, in _put
|
|
self.file_put(pipeline, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/cache.py", line 82, in file_put
|
|
final_pipe.put_result(f, result)
|
|
File "/usr/lib/python2.6/site-packages/redux/pipes/format.py", line 86, in put_result
|
|
f.write(result)
|
|
File "/usr/lib64/python2.6/io.py", line 1515, in write
|
|
s.__class__.__name__)
|
|
TypeError: can't write str to text stream
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55495248,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(55495312,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(55495504,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
REQUEST: filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&info=1&cache=0&oformat=JSON&frame=0
|
|
Running Read(55495248,filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc,frame=0,info=True)
|
|
Running Format(55495504,oformat=JSON,overlay=,overlaycolor=0.1,rgb=False)
|
|
REQUEST: pipeline=standard&filename=/var/www/html/myamiweb/test/img/08mar13e_00010gr_00004sq_v02_00005hl.mrc&shape=512x512&scaletype=stdev&scalemin=-5&scalemax=5&oformat=JPEG&overlaycolor=0.35
|
|
IN MEMORY: Format(55495568,oformat=JPEG,overlay=,overlaycolor=0.35,rgb=False)
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
calc_fftw3:
|
|
local wisdom imported
|
|
|
|
**power thread lock in effect
|
|
Traceback (most recent call last):
|
|
File "/usr/bin/reduxd", line 4, in <module>
|
|
|
|
redux.server.main()
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 80, in main
|
|
|
|
start_server(host, port)
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 57, in start_server
|
|
|
|
server = Server((host,port), RequestHandler)
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 412, in __init__
|
|
|
|
self.server_bind()
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 423, in server_bind
|
|
|
|
self.socket.bind(self.server_address)
|
|
File "<string>", line 1, in bind
|
|
socket
|
|
.
|
|
error
|
|
:
|
|
[Errno 98] Address already in use
|
|
|
|
*** Using custom copy of fftw3 wrapper
|
|
calc_fftw3:
|
|
4 CPUs found, setting threads=4
|
|
|
|
calc_fftw3:
|
|
local wisdom imported
|
|
|
|
**power thread lock in effect
|
|
Traceback (most recent call last):
|
|
File "/usr/bin/reduxd", line 4, in <module>
|
|
|
|
redux.server.main()
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 80, in main
|
|
|
|
start_server(host, port)
|
|
File "/usr/lib/python2.6/site-packages/redux/server.py", line 57, in start_server
|
|
|
|
server = Server((host,port), RequestHandler)
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 412, in __init__
|
|
|
|
self.server_bind()
|
|
File "/usr/lib64/python2.6/SocketServer.py", line 423, in server_bind
|
|
|
|
self.socket.bind(self.server_address)
|
|
File "<string>", line 1, in bind
|
|
socket
|
|
.
|
|
error
|
|
:
|
|
[Errno 98] Address already in use
|
|
|