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#
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# COPYRIGHT:
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# The Leginon software is Copyright 2003
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# The Scripps Research Institute, La Jolla, CA
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# For terms of the license agreement
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# see http://ami.scripps.edu/software/leginon-license
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#
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import ccdcamera
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import sys
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import numpy
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import time
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try:
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import pythoncom
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import pywintypes
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import win32com.client
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import comarray
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except ImportError:
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pass
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class Gatan(ccdcamera.CCDCamera):
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name = 'Gatan'
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def __init__(self):
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ccdcamera.CCDCamera.__init__(self)
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self.unsupported = []
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self.cameraid = 0
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pythoncom.CoInitializeEx(pythoncom.COINIT_MULTITHREADED)
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try:
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self.camera = win32com.client.dynamic.Dispatch('TecnaiCCD.GatanCamera.2')
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except pywintypes.com_error, e:
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raise RuntimeError('unable to initialize Gatan interface')
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self.camerasize = self._getCameraSize()
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self.binning = {'x': self.camera.Binning, 'y': self.camera.Binning}
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self.offset = {'x': self.camera.CameraLeft, 'y': self.camera.CameraTop}
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self.dimension = {'x': self.camera.CameraRight - self.camera.CameraLeft,
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'y': self.camera.CameraBottom - self.camera.CameraTop}
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self.exposuretype = 'normal'
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if not self.getRetractable():
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self.unsupported.append('getInserted')
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self.unsupported.append('setInserted')
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## Energy filter functions are handled through DM scripting.
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## For each function define in pyscope, we need to determine the
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## corresponding DM scripting function. The following dictionary
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## contains the possibilities. Format of this dict:
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## {'pyscope_function': [list of possible DM functions], ...}
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## The list of possible DM functions is in order from oldest
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## known to most recent known.
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possible_functions = {
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'getEnergyFilter': ['AFGetSlitState', 'IFCGetSlitState', 'IFCGetSlitIn'],
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'setEnergyFilter': ['AFSetSlitState', 'IFCSetSlitState', 'IFCSetSlitIn'],
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'getEnergyFilterWidth': ['AFGetSlitWidth', 'IFCGetSlitWidth'],
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'setEnergyFilterWidth': ['AFSetSlitWidth', 'IFCSetSlitWidth'],
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'alignEnergyFilterZeroLossPeak': ['IFCDoAlignZeroLoss', 'GTCenterZeroLoss'],
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}
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## Now test for the supported function. If more than one of
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## the possibilities is supported, use the most recent.
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self.filter_functions = {}
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for method_name, script_functions in possible_functions.items():
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self.filter_functions[method_name] = None
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for script_function in script_functions:
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if self.hasScriptFunction(script_function):
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## more recent one may overwrite older one
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self.filter_functions[method_name] = script_function
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## maybe none are supported
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if self.filter_functions[method_name] is None:
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self.unsupported.append(method_name)
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def __getattribute__(self, attr_name):
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if attr_name in object.__getattribute__(self, 'unsupported'):
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raise AttributeError('attribute not supported')
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return object.__getattribute__(self, attr_name)
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def getOffset(self):
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return dict(self.offset)
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def setOffset(self, value):
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self.offset = dict(value)
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def getDimension(self):
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return dict(self.dimension)
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def setDimension(self, value):
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self.dimension = dict(value)
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def getBinning(self):
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return dict(self.binning)
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def setBinning(self, value):
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if value['x'] != value['y']:
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raise ValueError('multiple binning dimesions not supported')
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self.binning = dict(value)
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def getExposureTime(self):
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return self.camera.ExposureTime*1000.0
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def setExposureTime(self, value):
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self.camera.ExposureTime = value/1000.0
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def getExposureTypes(self):
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return ['normal', 'dark']
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def getExposureType(self):
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return self.exposuretype
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def setExposureType(self, value):
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if value not in ['normal', 'dark']:
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raise ValueError('invalid exposure type')
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self.exposuretype = value
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def _getImage(self):
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try:
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self.camera.Binning = self.binning['x']
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self.camera.CameraLeft = self.offset['x']
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self.camera.CameraTop = self.offset['y']
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self.camera.CameraRight = self.dimension['x'] + self.camera.CameraLeft
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self.camera.CameraBottom = self.dimension['y'] + self.camera.CameraTop
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except pywintypes.com_error, e:
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raise ValueError('invalid image dimensions')
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if self.getExposureType() == 'dark':
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if False:
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#if self.getRetractable():
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if self.getInserted():
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self.setInserted(False)
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image = comarray.call(self.camera, 'AcquireRawImage')
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self.setInserted(True)
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return image
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else:
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exposuretime = self.getExposureTime()
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self.setExposureTime(0)
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image = comarray.call(self.camera, 'AcquireRawImage')
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self.setExposureTime(exposuretime)
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return image
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try:
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image = comarray.call(self.camera, 'AcquireRawImage')
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return image.astype(numpy.uint16)
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except pywintypes.com_error, e:
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raise ValueError('invalid image dimensions')
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def getCameraSize(self):
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return self.camerasize
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def getPixelSize(self):
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x, y = self.camera.GetCCDPixelSize(self.cameraid)
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return {'x': x, 'y': y}
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def getAcquiring(self):
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if self.camera.IsAcquiring:
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return True
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else:
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return False
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def getSpeed(self):
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return self.camera.Speed
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def setSpeed(self, value):
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try:
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self.camera.Speed = value
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except pywintypes.com_error, e:
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raise ValueError('invalid speed')
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def getRetractable(self):
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if self.camera.IsRetractable:
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return True
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else:
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return False
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def setInserted(self, value):
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inserted = self.getInserted()
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if not inserted and value:
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self.camera.Insert()
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elif inserted and not value:
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self.camera.Retract()
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else:
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return
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time.sleep(5)
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def getInserted(self):
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if self.camera.IsInserted:
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return True
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else:
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return False
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def _getCameraSize(self):
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binning = self.camera.Binning
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left = self.camera.CameraLeft
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right = self.camera.CameraRight
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top = self.camera.CameraTop
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bottom = self.camera.CameraBottom
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self.camera.CameraLeft = 0
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self.camera.CameraTop = 0
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size = {}
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for i in ['CameraRight', 'CameraBottom']:
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for j in [4096, 2048, 1024]:
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try:
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setattr(self.camera, i, j)
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except:
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continue
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try:
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setattr(self.camera, i, j + 1)
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except:
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size[i] = j
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break
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if i not in size:
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j = 0
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while True:
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try:
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setattr(self.camera, i, j)
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j += 1
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except:
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break
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size[i] = j - 1
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self.camera.Binning = binning
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self.camera.CameraLeft = left
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self.camera.CameraRight = right
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self.camera.CameraTop = top
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self.camera.CameraBottom = bottom
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return {'x': size['CameraRight'], 'y': size['CameraBottom']}
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def hasScriptFunction(self, name):
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script = 'if(DoesFunctionExist("%s")) Exit(1.0) else Exit(-1.0)'
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script %= name
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result = self.camera.ExecuteScript(script)
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return result > 0.0
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def getEnergyFiltered(self):
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method_names = [
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'getEnergyFilter',
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'setEnergyFilter',
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'getEnergyFilterWidth',
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'setEnergyFilterWidth',
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'alignEnergyFilterZeroLossPeak',
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]
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for method_name in method_names:
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if not hasattr(self, method_name):
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return False
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return True
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def getEnergyFilter(self):
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script = 'if(%s()) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['getEnergyFilter'],)
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result = self.camera.ExecuteScript(script)
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return result > 0.0
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def setEnergyFilter(self, value):
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if value:
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i = 1
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else:
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i = 0
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script = '%s(%d)' % (self.filter_functions['setEnergyFilter'], i)
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self.camera.ExecuteScript(script)
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def getEnergyFilterWidth(self):
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script = 'Exit(%s())' % (self.filter_functions['getEnergyFilterWidth'],)
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result = self.camera.ExecuteScript(script)
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return result
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def setEnergyFilterWidth(self, value):
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script = 'if(%s(%f)) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['setEnergyFilterWidth'], value)
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result = self.camera.ExecuteScript(script)
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if result < 0.0:
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raise RuntimeError('unable to set energy filter width')
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def alignEnergyFilterZeroLossPeak(self):
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script = 'if(%s()) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['alignEnergyFilterZeroLossPeak'],)
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result = self.camera.ExecuteScript(script)
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if result < 0.0:
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raise RuntimeError('unable to align energy filter zero loss peak')
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class GatanGIF(ccdcamera.CCDCamera):
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name = 'GatanGIF'
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def __init__(self):
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ccdcamera.CCDCamera.__init__(self)
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self.unsupported = []
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self.cameraid = 0
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pythoncom.CoInitializeEx(pythoncom.COINIT_MULTITHREADED)
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try:
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self.camera = win32com.client.dynamic.Dispatch('TecnaiCCD.GatanCamera.2')
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except pywintypes.com_error, e:
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raise RuntimeError('unable to initialize Gatan interface')
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self.camerasize = self._getCameraSize()
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self.binning = {'x': self.camera.Binning, 'y': self.camera.Binning}
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self.offset = {'x': self.camera.CameraLeft, 'y': self.camera.CameraTop}
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self.dimension = {'x': self.camera.CameraRight - self.camera.CameraLeft,
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'y': self.camera.CameraBottom - self.camera.CameraTop}
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self.exposuretype = 'normal'
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if not self.getRetractable():
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self.unsupported.append('getInserted')
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self.unsupported.append('setInserted')
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## Energy filter functions are handled through DM scripting.
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## For each function define in pyscope, we need to determine the
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## corresponding DM scripting function. The following dictionary
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## contains the possibilities. Format of this dict:
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## {'pyscope_function': [list of possible DM functions], ...}
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## The list of possible DM functions is in order from oldest
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## known to most recent known.
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possible_functions = {
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'getEnergyFilter': ['AFGetSlitState', 'IFCGetSlitState', 'IFCGetSlitIn'],
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'setEnergyFilter': ['AFSetSlitState', 'IFCSetSlitState', 'IFCSetSlitIn'],
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'getEnergyFilterWidth': ['AFGetSlitWidth', 'IFCGetSlitWidth'],
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'setEnergyFilterWidth': ['AFSetSlitWidth', 'IFCSetSlitWidth'],
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'alignEnergyFilterZeroLossPeak': ['IFCDoAlignZeroLoss', 'GTCenterZeroLoss'],
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}
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## Now test for the supported function. If more than one of
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## the possibilities is supported, use the most recent.
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self.filter_functions = {}
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for method_name, script_functions in possible_functions.items():
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self.filter_functions[method_name] = None
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for script_function in script_functions:
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if self.hasScriptFunction(script_function):
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## more recent one may overwrite older one
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self.filter_functions[method_name] = script_function
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## maybe none are supported
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if self.filter_functions[method_name] is None:
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self.unsupported.append(method_name)
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def __getattribute__(self, attr_name):
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if attr_name in object.__getattribute__(self, 'unsupported'):
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raise AttributeError('attribute not supported')
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return object.__getattribute__(self, attr_name)
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def getOffset(self):
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return dict(self.offset)
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def setOffset(self, value):
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self.offset = dict(value)
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def getDimension(self):
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return dict(self.dimension)
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def setDimension(self, value):
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self.dimension = dict(value)
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def getBinning(self):
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return dict(self.binning)
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def setBinning(self, value):
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if value['x'] != value['y']:
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raise ValueError('multiple binning dimesions not supported')
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self.binning = dict(value)
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def getExposureTime(self):
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return self.camera.ExposureTime*1000.0
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def setExposureTime(self, value):
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self.camera.ExposureTime = value/1000.0
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def getExposureTypes(self):
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return ['normal', 'dark']
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def getExposureType(self):
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return self.exposuretype
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def setExposureType(self, value):
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if value not in ['normal', 'dark']:
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raise ValueError('invalid exposure type')
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self.exposuretype = value
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def _getImage(self):
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try:
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self.camera.Binning = self.binning['x']
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self.camera.CameraLeft = self.offset['x']
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self.camera.CameraTop = self.offset['y']
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self.camera.CameraRight = self.dimension['x'] + self.camera.CameraLeft
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self.camera.CameraBottom = self.dimension['y'] + self.camera.CameraTop
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except pywintypes.com_error, e:
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raise ValueError('invalid image dimensions')
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if self.getExposureType() == 'dark':
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if False:
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#if self.getRetractable():
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if self.getInserted():
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self.setInserted(False)
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image = comarray.call(self.camera, 'AcquireRawImage')
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self.setInserted(True)
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return image
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else:
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exposuretime = self.getExposureTime()
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self.setExposureTime(0)
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image = comarray.call(self.camera, 'AcquireRawImage')
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self.setExposureTime(exposuretime)
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return image
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try:
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image = comarray.call(self.camera, 'AcquireRawImage')
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return image.astype(numpy.uint16)
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except pywintypes.com_error, e:
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raise ValueError('invalid image dimensions')
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|
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def getCameraSize(self):
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return self.camerasize
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def getPixelSize(self):
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x, y = self.camera.GetCCDPixelSize(self.cameraid)
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return {'x': x, 'y': y}
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def getAcquiring(self):
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if self.camera.IsAcquiring:
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return True
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else:
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return False
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def getSpeed(self):
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return self.camera.Speed
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def setSpeed(self, value):
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try:
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self.camera.Speed = value
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except pywintypes.com_error, e:
|
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raise ValueError('invalid speed')
|
|
|
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def getRetractable(self):
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if self.camera.IsRetractable:
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return True
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else:
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return False
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def setInserted(self, value):
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inserted = self.getInserted()
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if not inserted and value:
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self.camera.Insert()
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elif inserted and not value:
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self.camera.Retract()
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else:
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return
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time.sleep(5)
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|
|
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def getInserted(self):
|
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if self.camera.IsInserted:
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return True
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else:
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return False
|
|
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def _getCameraSize(self):
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binning = self.camera.Binning
|
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left = self.camera.CameraLeft
|
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right = self.camera.CameraRight
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top = self.camera.CameraTop
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bottom = self.camera.CameraBottom
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|
|
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self.camera.CameraLeft = 0
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self.camera.CameraTop = 0
|
|
|
|
size = {}
|
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for i in ['CameraRight', 'CameraBottom']:
|
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for j in [4096, 2048, 1024]:
|
|
try:
|
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setattr(self.camera, i, j)
|
|
except:
|
|
continue
|
|
try:
|
|
setattr(self.camera, i, j + 1)
|
|
except:
|
|
size[i] = j
|
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break
|
|
if i not in size:
|
|
j = 0
|
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while True:
|
|
try:
|
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setattr(self.camera, i, j)
|
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j += 1
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except:
|
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break
|
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size[i] = j - 1
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self.camera.Binning = binning
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self.camera.CameraLeft = left
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self.camera.CameraRight = right
|
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self.camera.CameraTop = top
|
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self.camera.CameraBottom = bottom
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return {'x': size['CameraRight'], 'y': size['CameraBottom']}
|
|
|
|
def hasScriptFunction(self, name):
|
|
script = 'if(DoesFunctionExist("%s")) Exit(1.0) else Exit(-1.0)'
|
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script %= name
|
|
result = self.camera.ExecuteScript(script)
|
|
return result > 0.0
|
|
|
|
def getEnergyFiltered(self):
|
|
method_names = [
|
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'getEnergyFilter',
|
|
'setEnergyFilter',
|
|
'getEnergyFilterWidth',
|
|
'setEnergyFilterWidth',
|
|
'alignEnergyFilterZeroLossPeak',
|
|
]
|
|
|
|
for method_name in method_names:
|
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if not hasattr(self, method_name):
|
|
return False
|
|
return True
|
|
|
|
def getEnergyFilter(self):
|
|
script = 'if(%s()) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['getEnergyFilter'],)
|
|
result = self.camera.ExecuteScript(script)
|
|
return result > 0.0
|
|
|
|
def setEnergyFilter(self, value):
|
|
if value:
|
|
i = 1
|
|
else:
|
|
i = 0
|
|
script = '%s(%d)' % (self.filter_functions['setEnergyFilter'], i)
|
|
self.camera.ExecuteScript(script)
|
|
|
|
def getEnergyFilterWidth(self):
|
|
script = 'Exit(%s())' % (self.filter_functions['getEnergyFilterWidth'],)
|
|
result = self.camera.ExecuteScript(script)
|
|
return result
|
|
|
|
def setEnergyFilterWidth(self, value):
|
|
script = 'if(%s(%f)) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['setEnergyFilterWidth'], value)
|
|
result = self.camera.ExecuteScript(script)
|
|
if result < 0.0:
|
|
raise RuntimeError('unable to set energy filter width')
|
|
|
|
def alignEnergyFilterZeroLossPeak(self):
|
|
script = 'if(%s()) Exit(1.0) else Exit(-1.0)' % (self.filter_functions['alignEnergyFilterZeroLossPeak'],)
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result = self.camera.ExecuteScript(script)
|
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if result < 0.0:
|
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raise RuntimeError('unable to align energy filter zero loss peak')
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|