SortJunk problem
Added by Fei Sun over 13 years ago
Hi, when I am trying to use Xmipp to do the sortjunk task against my picked-out stack. I found the error message like :
['/leginon/appion/lib', '/leginon/appion/3rPackage/EMAN1.9/bin', '/leginon/appion/3rPackage/EMAN1.9/lib']
['/leginon/appion/lib', '/leginon/appion/3rPackage/EMAN1.9/bin', '/leginon/appion/3rPackage/EMAN1.9/lib']
Traceback (most recent call last):
File "/leginon/appion/bin/sortJunkStack.py", line 153, in ?
sortJunk.start()
File "/leginon/appion/bin/sortJunkStack.py", line 59, in start
apXmipp.gatherSingleFilesIntoStack("sort_junk.sel","sorted.hed")
File "/leginon/appion/lib/appionlib/apXmipp.py", line 193, in gatherSingleFilesIntoStack
apImagicFile.writeImagic(stackarray, stackname, msg=False)
File "/leginon/appion/lib/appionlib/apImagicFile.py", line 250, in writeImagic
shape = part.shape
AttributeError: 'NoneType' object has no attribute 'shape'
How can I fix this issue?
By the way, I attached the whole log here.
Thanks!
Fei
sortjunk1.appionsub.log (8.45 KB) sortjunk1.appionsub.log | Log file | ||
sortjunk1.appionsub.job (457 Bytes) sortjunk1.appionsub.job | Job file |