Refinement job proc number error

Added by Jason van Rooyen over 10 years ago

Hi,

When setting up jobs (EMAN in particular) in the Refinement Job Launcher on my cluster, if I set proc/node=24 the eman_reconX.appionsub.job defaults to "proc=4" for all the "refine" calls even thought the PBS derivatives at the start of the file read: "#PBS -l nodes=1:ppn=24".

Any thoughts on where I could locate the problem in runJob.py or elsewhere?

Thanks,
Jason

Replies (1)

RE: Refinement job proc number error - Added by Amber Herold over 10 years ago

Hi Jason,
You'll want to look at the rpn setting for the refinement labeled recons/node in the refinement GUI.
The line of code using this is in appion/lib/apRefineJob.py line 139. This sets nproc which later sets the proc=nproc in apRefineJobEman.py on line 140.

First insure that your values for rpn*nodes is not indeed 4, which would be expected behavior.

Amber

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